Evidence map›Paper›PMID 15843463›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Early events in the folding of four-helix-bundle heme proteins.

Jasmin Faraone-Mennella, Harry B Gray, Jay R Winkler

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Unfolding cytochromes c-bJournal of inorganic biochemistry · 2020
    Article
  2. Domain-swapped cytochromeChemical science · 2015
    Article
  3. Article
  4. Intrachain contact dynamics in unfolded cytochrome cb562.The journal of physical chemistry. B · 2013
    Article
  5. Snapshots of a protein folding intermediate.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  6. Folding energy landscape of cytochrome cb562.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  7. Probing the cytochrome c' folding landscape.Journal of inorganic biochemistry · 2007
    Article
  8. Site-specific collapse dynamics guide the formation of the cytochrome c' four-helix bundle.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  9. Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*.Protein science : a publication of the Protein Society · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jasmin Faraone-MennellaBeckman Institute, California Institute of Technology, Pasadena, CA 91125-7400, USA.
Harry B Gray
Jay R Winkler
California Institute of Technology · US

Funding

Elucidating Protein Folding MechanismsR01GM068461 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI WINKLER, JAY R · 2003 to 2010
$2.2M
NIGMS NIH HHS GGM068461NIGMS NIH HHS R01 GM068461
6 · The paper itself

Abstract

Topologically homologous four-helix-bundle heme proteins exhibit striking diversity in their refolding kinetics. Cytochrome b562 has been reported to fold on a sub-millisecond time scale, whereas cytochrome c' refolding requires 10 s or more to complete. Heme dissociation in cytochrome b562 interferes with studies of folding kinetics, so a variant of cytochrome b562 (cytochrome c-b562) with a covalent c-type linkage to the heme has been expressed in Escherichia coli. Early events in the electron transfer-triggered folding of Fe(II)-cytochrome c-b562, along with those of Fe(II)-cytochrome c556, have been examined by using time-resolved absorption spectroscopy. Coordination of S(Met) to Fe(II) occurs within 10 mus after reduction of the denatured Fe(III)-cytochromes, and shortly thereafter (100 micros) the heme spectra are indistinguishable from those of the folded proteins. Under denaturing conditions, carbon monoxide binds to the Fe(II)-hemes in approximately 15 ms. By contrast, CO binding cannot compete with refolding in the Fe(II)-cytochromes, thereby confirming that the polypeptide encapsulates the heme in <10 ms. We suggest that Fe-S(Met) ligation facilitates refolding in these four-helix-bundle heme proteins by reducing the conformational freedom of the polypeptide chain.

Indexed as

Protein FoldingCarbon MonoxideCircular DichroismCytochromes bCytochromes cEscherichia coliHemeKineticsProtein ConformationSpectrometry, FluorescenceCarbon MonoxideCytochromes bCytochromes cHeme

Identifiers

PMID15843463
PMCPMC1088390
OpenAlexW1964756253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.