Evidence map›Paper›PMID 15841179›Full record

ArticleThe Journal of clinical investigation2005

An inversion involving the mouse Shh locus results in brachydactyly through dysregulation of Shh expression.

Michael Niedermaier, Georg C Schwabe, Stephan Fees, Anne Helmrich, Norbert Brieske, Petra Seemann, Jochen Hecht, Volkhard Seitz, Sigmar Stricker, Gundula Leschik and 3 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 75 citations in OpenAlex.

  1. A misplaced lncRNA causes brachydactyly in humans.The Journal of clinical investigation · 2012
    Trial
  2. Pathogenesis and potential therapeutic targets of trichorhinophalangeal syndrome; lessons obtained from animal studies.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Review
  3. Article
  4. Article
  5. Cellular and molecular mechanisms of Hedgehog signalling.Nature reviews. Molecular cell biology · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. A Novel NonsenseFrontiers in genetics · 2020
    Article
  10. Mechanisms of synovial joint and articular cartilage development.Cellular and molecular life sciences : CMLS · 2019
    Review
  11. Review
  12. Structural variation in the 3D genome.Nature reviews. Genetics · 2018
    Review
  13. Enhancer adoption caused by genomic insertion elicits interdigitalProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Article
  16. Mapping the Shh long-range regulatory domain.Development (Cambridge, England) · 2014
    Article
  17. Genesis and morphogenesis of limb synovial joints and articular cartilage.Matrix biology : journal of the International Society for Matrix Biology · 2014
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Michael NiedermaierMax Planck Institute for Molecular Genetics, Berlin, Germany.
Georg C Schwabe
Stephan Fees
Anne Helmrich
Norbert Brieske
Petra Seemann
Jochen Hecht
Volkhard Seitz
Sigmar Stricker
Gundula Leschik
Evelin Schrock
Paul B Selby
Stefan Mundlos
Max Planck Institute for Molecular Genetics · DEHumboldt-Universität zu Berlin · DEJohannes Gutenberg University Mainz · DETU Dresden · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Short digits (Dsh) is a radiation-induced mouse mutant. Homozygous mice are characterized by multiple defects strongly resembling those resulting from Sonic hedgehog (Shh) inactivation. Heterozygous mice show a limb reduction phenotype with fusion and shortening of the proximal and middle phalanges in all digits, similar to human brachydactyly type A1, a condition caused by mutations in Indian hedgehog (IHH). We mapped Dsh to chromosome 5 in a region containing Shh and were able to demonstrate an inversion comprising 11.7 Mb. The distal breakpoint is 13.298 kb upstream of Shh, separating the coding sequence from several putative regulatory elements identified by interspecies comparison. The inversion results in almost complete downregulation of Shh expression during E9.5-E12.5, explaining the homozygous phenotype. At E13.5 and E14.5, however, Shh is upregulated in the phalangeal anlagen of Dsh/+ mice, at a time point and in a region where WT Shh is never expressed. The dysregulation of Shh expression causes the local upregulation of hedgehog target genes such as Gli1-3, patched, and Pthlh, as well as the downregulation of Ihh and Gdf5. This results in shortening of the digits through an arrest of chondrocyte differentiation and the disruption of joint development.

Indexed as

Chromosome InversionFootFoot Deformities, CongenitalGene Expression Regulation, DevelopmentalAnimalsChromosomes, Human, Pair 5Embryo, MammalianHedgehog ProteinsHumansIn Situ HybridizationJointsMiceMice, Inbred C3HMice, Inbred C57BLMorphogenesisOsteogenesisHedgehog ProteinsSHH protein, humanShh protein, mouseTrans-Activators

Identifiers

PMID15841179
PMCPMC1070420
OpenAlexW2158469345

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.