ArticleBMC genomics2005
Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss).
Article in BMC genomics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- First haploid genetic map based on microsatellite markers in Senegalese sole (Solea senegalensis, Kaup 1858).Marine biotechnology (New York, N.Y.) · 2015Article
- Time scale matters: genetic analysis does not support adaptation-by-time as the mechanism for adaptive seasonal declines in kokanee reproductive life span.Ecology and evolution · 2014Article
- Identifying environmental variables explaining genotype-by-environment interaction for body weight of rainbow trout (Onchorynchus mykiss): reaction norm and factor analytic models.Genetics, selection, evolution : GSE · 2014Article
- Rearing in seawater mesocosms improves the spawning performance of growth hormone transgenic and wild-type coho salmon.PloS one · 2014Article
- Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci.G3 (Bethesda, Md.) · 2013Article
- Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies.BMC genomics · 2012Article
- A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the three-spined stickleback (Gasterosteus aculeatus).Marine biotechnology (New York, N.Y.) · 2012Article
- Detection of outlier loci and their utility for fisheries management.Evolutionary applications · 2012Article
- A genetic linkage map and comparative genome analysis of common carp (Cyprinus carpio L.) using microsatellites and SNPs.Molecular genetics and genomics : MGG · 2011Article
- Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes.BMC genomics · 2011Article
- Genomic approaches with natural fish populations.Journal of fish biology · 2010Review
- Estimates of linkage disequilibrium and effective population size in rainbow trout.BMC genetics · 2009Article
- Genetic characterisation of farmed rainbow trout in Norway: intra- and inter-strain variation reveals potential for identification of escapees.BMC genetics · 2008Article
- A second generation genetic map for rainbow trout (Oncorhynchus mykiss).BMC genetics · 2008Article
- Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs.BMC genomics · 2007Article
- A meiotic linkage map of the silver fox, aligned and compared to the canine genome.Genome research · 2007Article
- A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms.BMC genomics · 2006Article
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8 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundComparative genomics, through the integration of genetic maps from species of interest with whole genome sequences of other species, will facilitate the identification of genes affecting phenotypes of interest. The development of microsatellite markers from expressed sequence tags will serve to increase marker densities on current salmonid genetic maps and initiate in silico comparative maps with species whose genomes have been fully sequenced.
resultsEighty-nine polymorphic microsatellite markers were generated for rainbow trout of which at least 74 amplify in other salmonids. Fifty-five have been associated with functional annotation and 30 were mapped on existing genetic maps. Homologous sequences were identified for 20 of the EST containing microsatellites to identify comparative assignments within the tetraodon, mouse, and/or human genomes.
conclusionThe addition of microsatellite markers constructed from expressed sequence tag data will facilitate the development of high-density genetic maps for rainbow trout and comparative maps with other salmonids and better studied species.
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