Evidence map›Paper›PMID 15834633›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2005

Genetic analysis of anal atresia in pigs: evidence for segregation at two main loci.

Pamela Cassini, Alberto Montironi, Sara Botti, Tetsuo Hori, Haruo Okhawa, Alessandra Stella, Leif Andersson, Elisabetta Giuffra

Abstract read
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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Congenital Malformations in River Buffalo (Bubalus bubalis).Animals : an open access journal from MDPI · 2017
    Review
  2. Molecular characterization and genome-wide mutations in porcine anal atresia candidate gene GLI2.Mammalian genome : official journal of the International Mammalian Genome Society · 2013
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Pamela CassiniParco Tecnologico Padano, Centro Ricerche Studi Agroalimentari, Polo Universitario, via A. Einstein 2, 26900, Lodi, Italy.
Alberto Montironi
Sara Botti
Tetsuo Hori
Haruo Okhawa
Alessandra Stella
Leif Andersson
Elisabetta Giuffra
Parco Tecnologico Padano · ITIbaraki Children's Hospital · JPUniversity of Tsukuba · JPUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anal atresia is a relatively common congenital malformation that occurs in about 1 out of 5000 infants, caused by abnormal hindgut development of the embryo, often associated with other developmental anomalies (e.g., Currarino, Townes-Brock, Pallister-Hall syndromes, and VATER association). Genetic analysis in human families is exceedingly difficult due to the multifactorial nature of the trait. In pigs, anal atresia occurs at a higher incidence (0.18%) than in humans. A complete genome scan (165 microsatellite markers) was performed using a backcross pedigree previously obtained by crossing affected animals from a partially inbred line, selected for a high incidence of anal atresia, with an unaffected male of a different breed (Meishan). The data set was analyzed with classical linkage (TWOPOINT) and nonparametric genetic methods (NPL, Non-Parametric Linkage, and TDT, Transmission Disequilibrium Test). Both methods support association of the trait with two loci on Chromosomes 9 and 15. GLI2 (GLI-Kruppel family member GLI2) was identified as a positional candidate gene based on comparative mapping; radiation hybrid mapping confirmed that this locus is located within the QTL region.

Indexed as

Chromosome SegregationAnimalsAnus, ImperforateChromosome MappingCrosses, GeneticFemaleGenetic LinkageHumansMaleSus scrofa

Identifiers

PMID15834633
OpenAlexW1994885466

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.