Evidence map›Paper›PMID 15832170›Full record

ArticleEMBO reports2005

The histone-binding code of nuclear receptor co-repressors matches the substrate specificity of histone deacetylase 3.

Helen B Hartman, Jiujiu Yu, Theresa Alenghat, Takahiro Ishizuka, Mitchell A Lazar

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Autoregulatory loop of nuclear corepressor 1 expression controls invasion, tumor growth, and metastasis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  11. Article
  12. Article
  13. Nuclear receptor corepressor complexes in cancer: mechanism, function and regulation.American journal of clinical and experimental urology · 2014
    Review
  14. Article
  15. DNA damage induced MutS homologue hMSH4 acetylation.International journal of molecular sciences · 2013
    Article
  16. Article
  17. Nuclear hormone receptor co-repressors: structure and function.Molecular and cellular endocrinology · 2012
    Review
  18. HDAC3 and the molecular brake pad hypothesis.Neurobiology of learning and memory · 2011
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Helen B HartmanDivision of Endocrinology, Diabetes and Metabolism, Department of Medicine,The Institute for Diabetes, Obesity and Metabolism, University of Pennsylvania School of Medicine, 611 CRB, 415 Curie Boulevard, Philadelphia, Pennsylvania 19104, USA.
Jiujiu Yu
Theresa Alenghat
Takahiro Ishizuka
Mitchell A Lazar
University of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ligands for nuclear receptors facilitate the exchange of co-repressors for coactivators, leading to chromatin modifications that favour the activation of gene transcription. Here, we show that the repressed state of an endogenous retinoic acid-regulated gene is quickly re-established after ligand removal. As expected, repression is characterized by recruitment of N-CoR/SMRT-HDAC3 (histone deacetylase 3) co-repressor complexes, leading to local histone hypoacetylation. The achievement of the repressed state involves the ordered deacetylation of lysines in H4 tails. This order is determined by the inherent substrate specificity of HDAC3, and unexpectedly predicts the binding preference of N-CoR/SMRT for submaximally acetylated H4 tails. The match between the specificity of acetyl-histone deacetylation by HDAC3 and the histone-binding preference of N-CoR/SMRT allows the co-repressor complex to stabilize and propagate repression of nuclear hormone receptor gene targets.

Indexed as

Histone Code3T3-L1 CellsAcetylationAnimalsChromatinDNA-Binding ProteinsGene Expression RegulationHistone Deacetylase 3Histone DeacetylasesHistonesLigandsMiceMucoproteinsNuclear ProteinsNuclear Receptor Co-Repressor 1Nuclear Receptor Co-Repressor 2ChromatinDNA-Binding ProteinsHistone Deacetylase 3Histone DeacetylasesHistonesLigandslysin, gastropodaMucoproteinsNcor1 protein, mouseNcor2 protein, mouseNuclear ProteinsNuclear Receptor Co-Repressor 1Nuclear Receptor Co-Repressor 2Receptors, Retinoic AcidRepressor ProteinsRetinoic Acid Receptor gammaTretinoin

Identifiers

PMID15832170
PMCPMC1299301
OpenAlexW2079262483

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.