Evidence map›Paper›PMID 15827125›Full record

ArticleBlood2005

Mutant-specific gene programs in the zebrafish.

Gerhard J Weber, Sung E Choe, Kimberly A Dooley, Noëlle N Paffett-Lugassy, Yi Zhou, Leonard I Zon

Open access · greenAbstract read
In one paragraph

Article in Blood, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 100 citations in OpenAlex.

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  10. The Role of NCOA4-Mediated Ferritinophagy in Health and Disease.Pharmaceuticals (Basel, Switzerland) · 2018
    Review
  11. Thyroid hormone receptor beta and NCOA4 regulate terminal erythrocyte differentiation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Gerhard J WeberChildren's Hospital Stem Cell Program, Department of Hematology/Oncology, Howard Hughes Medical Institute, Karp 7, 1 Blackfan Circle, Boston, MA 02115, USA.
Sung E Choe
Kimberly A Dooley
Noëlle N Paffett-Lugassy
Yi Zhou
Leonard I Zon
Boston Children's Hospital · US

Funding

Comparative Approach to the Hematopoietic Stem CellU01DK063328 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 2002 to 2004
$3.0M
NIDDK NIH HHS 1U01 DK63 328
6 · The paper itself

Abstract

Hematopoiesis involves the production of stem cells, followed by the orchestrated differentiation of the blood lineages. Genetic screens in zebrafish have identified mutants with defects that disrupt specific stages of hematopoiesis and vasculogenesis, including the cloche, spadetail (tbx16), moonshine (tif1g), bloodless, and vlad tepes (gata1) mutants. To better characterize the blood program, gene expression profiling was carried out in these mutants and in scl-morphants (scl(mo)). Distinct gene clusters were demarcated by stage-specific and mutant-specific gene regulation. These were found to correlate with the transcriptional program of hematopoietic progenitor cells, as well as of the erythroid, myeloid, and vascular lineages. Among these, several novel hematopoietic and vascular genes were detected, for instance, the erythroid transcription factors znfl2 and ncoa4. A specific regulation was found for myeloid genes, as they were more strongly expressed in vlt mutants compared with other erythroid mutants. A unique gene expression pattern of up-regulated isoprenoid synthesis genes was found in cloche and scl(mo), possibly in migrating cells. In conjunction with the high conservation of vertebrate hematopoiesis, the comparison of transcriptional profiles in zebrafish blood mutants represents a versatile and powerful tool to elucidate the genetic regulation of blood and blood vessel development.

Indexed as

MutationAnimalsBlood VesselsErythropoiesisGene Expression ProfilingGene Expression Regulation, DevelopmentalHematopoiesisIn Situ HybridizationMultigene FamilyMyelopoiesisPhenotypeTranscription, GeneticZebrafish

Identifiers

PMID15827125
PMCPMC1895186
OpenAlexW2061038973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.