Evidence map›Paper›PMID 15824904›Full record

ArticleMolecular genetics and genomics : MGG2005

Development of genetic methods and construction of a chromosomal glnK1 mutant in Methanosarcina mazei strain Gö1.

Claudia Ehlers, Katrin Weidenbach, Katharina Veit, Uwe Deppenmeier, William W Metcalf, Ruth A Schmitz

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
10.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. HThe FEBS journal · 2026
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  7. Teaching old dogs new tricks: genetic engineering methanogens.Applied and environmental microbiology · 2024
    Review
  8. Article
  9. Article
  10. Newly Established Genetic System for Functional Analysis of MetSV.International journal of molecular sciences · 2023
    Article
  11. Generating a Small Shuttle Vector for Effective Genetic Engineering ofInternational journal of molecular sciences · 2022
    Article
  12. Insights into the biotechnology potential ofFrontiers in microbiology · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. sRNARNA biology · 2017
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Claudia EhlersInstitut für Mikrobiologie und Genetik, Universität Göttingen, Grisebachstr. 8, 37077, Göttingen, Germany.
Katrin Weidenbach
Katharina Veit
Uwe Deppenmeier
William W Metcalf
Ruth A Schmitz
Universitätsmedizin Göttingen · DEKiel University · DEUniversity of Illinois Urbana-Champaign · USUniversity of Wisconsin–Milwaukee · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The methanogenic archaeon Methanosarcina mazei strain Gö1 has so far proven to be genetically intractable due to its low plating efficiency on solid medium and the lack of an effective transformation method. Here, we report the first significant improvement in plating efficiency (up to 10%), which was achieved by (1) selecting for a spontaneous mutant of M. mazei that shows significantly higher resistance to mechanical stress during spreading an agar plates, and (2) plating the cells in 0.5% top agar with trimethylamine as a carbon and energy source under a H2S-containing atmosphere (0.1%). Using this mutant we succeeded in establishing a liposome-mediated transformation protocol, which for the first time allowed genetic manipulation of the M. mazei Gö1 strain. We further report on the construction of the first chromosomal deletion mutant of M. mazei by means of homologous recombination. Characterization of this mutant strain revealed that M. mazei cells lacking a functional glnK1-gene exhibited a partial growth defect under nitrogen limitation when molecular nitrogen was used as the sole nitrogen source. Quantitative RT-PCR analysis, however, showed that genes involved in nitrogen assimilation or nitrogen fixation are transcribed in the glnK1 mutant as in the wild type. Thus, we propose that the archaeal GlnK1 protein is not directly involved in the transcriptional regulation of genes involved in nitrogen metabolism, but rather affects their protein products directly.

Indexed as

Blotting, SouthernBlotting, WesternCell Culture TechniquesChromosome DeletionChromosomes, ArchaealCulture MediaDNA PrimersEscherichia coliLiposomesMethanosarcinaMutationPuromycinReverse Transcriptase Polymerase Chain ReactionTransformation, BacterialCulture MediaDNA PrimersLiposomesPuromycin

Identifiers

PMID15824904
OpenAlexW2100057212

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.