Evidence map›Paper›PMID 15822129›Full record

ArticleAmerican journal of medical genetics. Part A2005

Use of the glycophorin A somatic mutation assay for rapid, unambiguous identification of Fanconi anemia homozygotes regardless of GPA genotype.

Viktoria N Evdokimova, Reagan K McLoughlin, Sharon L Wenger, Stephen G Grant

Abstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  6. Nucleotide excision repair deficiency is intrinsic in sporadic stage I breast cancer.Proceedings of the National Academy of Sciences of the United States of America · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Viktoria N EvdokimovaDepartment of Environmental and Occupational Health, Graduate School of Public Health, University of Pittsburgh, 3343 Forbes Avenue, Pittsburgh, PA 15213, USA.
Reagan K McLoughlin
Sharon L Wenger
Stephen G Grant
University of Pittsburgh · USWest Virginia University · US

Funding

Pilot ResearchP20CA103730 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHATTA, GURKAMAL S · 2003 to 2007
$3.2M
LIFESTYLE FACTORS AFFECTING FETAL SOMATIC MUTATIONR01HD033016 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BIGBEE, WILLIAM L · 1996 to 1999
–
NCI NIH HHS P20 CA103730NICHD NIH HHS HD 33016
6 · The paper itself

Abstract

A 7-year-old girl was hospitalized with pancytopenia requiring blood transfusion. She and an older brother with suspicious symptoms were referred for laboratory testing to confirm a clinical diagnosis of Fanconi anemia (FA). Blood samples from these two children and one parent were examined with the GPA somatic mutation assay. The patient's total GPA somatic mutation frequency of 1.4 x 10(-4) was determined despite the confounding effects of her recent transfusion, and was greater than 10-fold higher than that of a population of pediatric controls, consistent with the known FA phenotype. Her brother was not informative for the standard GPA assay, which requires heterozygosity for the MN blood group, but was analyzed with a modified assay that measured only allele loss mutation. His mutation frequency, 6.8 x 10(-4) was also supportive of a diagnosis of FA. Both analyses also showed evidence of ongoing mutation through terminal erythroblast differentiation, a characteristic of patients with DNA repair syndromes which further confirmed the diagnoses. These conclusions were confirmed with traditional DEB-induced chromosome breakage studies. The quantitative and qualitative aspects of the GPA assay relevant for applying this test for FA diagnosis, and perhaps for carrier detection, are discussed.

Indexed as

MutationAllelesChildFamily HealthFanconi AnemiaFemaleGene FrequencyGenotypeGlycophorinsHomozygoteHumansMaleGlycophorins

Identifiers

PMID15822129
PMCPMC4849896
OpenAlexW2080144247

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.