ReviewPlant molecular biology2005
Linkage disequilibrium and association studies in higher plants: present status and future prospects.
Review in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 224 papers, 1 of them a synthesis that pooled it.
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Who cites it
224 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population.BMC plant biology · 2010Pooled it
- Association mapping integrated with image-based phenomics identifies SNPs and candidate genes underpinning fruit morphology and development in chile pepper (Capsicum annum L.).G3 (Bethesda, Md.) · 2026Article
- Haplotype-based multi-locus genome-wide association study reveals genomic regions associated with reproductive stage high temperature stress tolerance in rice.Plant molecular biology · 2026Article
- SNP-based association analysis of key genes involved in triglyceride biosynthesis reveals genetic regulation of oil content and fatty acid composition in tree peony seeds.BMC plant biology · 2026Article
- Multi-locus genome-wide association mapping reveals loci underlying malt quality traits in heterogeneous Ethiopian Barley (Hordeum vulgare L.) germplasm.Scientific reports · 2026Article
- Haplotype-based genome-wide association study uncovers QTL for fruit-related traits in the 287 tomato accessions.BMC plant biology · 2026Article
- Haplotype applications in genomic selection.Genome biology · 2026Review
- ELGCot3D: a lightweight 3D cotton point cloud segmentation model based on EdgeConv-Local Attention-GCN and semantic feature enhancement.Frontiers in plant science · 2026Article
- Genome-wide association study of seedling leaf rust resistance in European winter wheat cultivars.Journal of applied genetics · 2025Article
- Genetic structure and marker-trait association analysis for agro-morphological and physiological characteristics in germplasm of wild barley (Hordeum vulgare subsp. spontaneum).Scientific reports · 2025Article
- Association studies for leaf rust resistance earmark differential genomic regions for silicon (Si) responsiveness in bread wheat (Triticum aestivum L.).BMC plant biology · 2025Article
- A Three-Dimensional Phenotype Extraction Method Based on Point Cloud Segmentation for All-Period Cotton Multiple Organs.Plants (Basel, Switzerland) · 2025Article
- Multi-locus genome-wide association mapping for major agronomic and yield-related traits in sorghum (Sorghum bicolor (L.) moench) landraces.BMC genomics · 2025Article
- Three-Dimensional Phenotyping Pipeline of Potted Plants Based on Neural Radiation Fields and Path Segmentation.Plants (Basel, Switzerland) · 2024Article
- Effect of Chromosomal Localization of NGS-Based Markers on Their Applicability for Analyzing Genetic Variation and Population Structure of Hexaploid Triticale.International journal of molecular sciences · 2024Article
- Identification of QTNs and Their Candidate Genes for Boll Number and Boll Weight in Upland Cotton.Genes · 2024Article
- Association study of morpho-phenological traits in quinoa (Chenopodium quinoa Willd.) using SSR markers.Scientific reports · 2024Article
- Identification of the domestication gene GmCYP82C4 underlying the major quantitative trait locus for the seed weight in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Advancements and Prospects of Genome-Wide Association Studies (GWAS) in Maize.International journal of molecular sciences · 2024Review
- Analyzing genomic variation in cultivated pumpkins and identification of candidate genes controlling seed traits.The plant genome · 2023Article
164 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
During the last two decades, DNA-based molecular markers have been extensively utilized for a variety of studies in both plant and animal systems. One of the major uses of these markers is the construction of genome-wide molecular maps and the genetic analysis of simple and complex traits. However, these studies are generally based on linkage analysis in mapping populations, thus placing serious limitations in using molecular markers for genetic analysis in a variety of plant systems. Therefore, alternative approaches have been suggested, and one of these approaches makes use of linkage disequilibrium (LD)-based association analysis. Although this approach of association analysis has already been used for studies on genetics of complex traits (including different diseases) in humans, its use in plants has just started. In the present review, we first define and distinguish between LD and association mapping, and then briefly describe various measures of LD and the two methods of its depiction. We then give a list of different factors that affect LD without discussing them, and also discuss the current issues of LD research in plants. Later, we also describe the various uses of LD in plant genomics research and summarize the present status of LD research in different plant genomes. In the end, we discuss briefly the future prospects of LD research in plants, and give a list of softwares that are useful in LD research, which is available as electronic supplementary material (ESM).
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15821975What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.