Evidence map›Paper›PMID 15821876›Full record

ArticlePlant molecular biology2005

Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.

Akihiro Hiraguri, Riku Itoh, Naoko Kondo, Yasuko Nomura, Daisuke Aizawa, Yusuke Murai, Hisashi Koiwa, Motoaki Seki, Kazuo Shinozaki, Toshiyuki Fukuhara

Abstract read
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Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 290 citations in OpenAlex.

  1. Article
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  3. Plant microRNA maturation and function.Nature reviews. Molecular cell biology · 2026
    Review
  4. Genome-wide identification and characterization ofFrontiers in plant science · 2026
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  13. Article
  14. Article
  15. Article
  16. microRNA production inFrontiers in plant science · 2023
    Review
  17. International journal of molecular sciences · 2022
    Article
  18. Review
  19. Article
  20. Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Akihiro HiraguriDepartment of Applied Biological Sciences, Tokyo University of Agriculture and Technology, Saiwaicho 3-5-8, Fuchu, Tokyo 183-8509, Japan.
Riku Itoh
Naoko Kondo
Yasuko Nomura
Daisuke Aizawa
Yusuke Murai
Hisashi Koiwa
Motoaki Seki
Kazuo Shinozaki
Toshiyuki Fukuhara
Tokyo University of Agriculture and Technology · JPCenter for Genomic Science · ITTexas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteins that specifically bind double-stranded RNA (dsRNA) are involved in the regulation of cellular signaling events and gene expression, and are characterized by a conserved dsRNA-binding motif (dsRBM). Here we report the biochemical properties of nine such gene products, each containing one or two dsRBMs: four Arabidopsis Dicer-like proteins (DCL1-4), Arabidopsis HYL1 and four of its homologs (DRB2, DRB4, DRB5 and OsDRB1). DCL1, DCL3, HYL1 and the four HYL1 homologs exhibit significant dsRNA-binding activity, indicating that these proteins are involved in RNA metabolism. The dsRBMs from dsRBM-containing proteins (dsRBPs) also function as a protein-protein interaction domain and homo- and heterodimerization are essential for biological functioning of these proteins. We show that DRB4 interacts specifically with DCL4, and HYL1 most strongly interacts with DCL1. These results indicate that each HYL1/DRB family protein interacts with one specific partner among the four Dicer-like proteins. Localization studies using GFP fusion proteins demonstrate that DCL1, DCL4, HYL1 and DRB4 localize in the nucleus, while DRB2 is present in the cytoplasm. Subcellular localizations of HYL1, DRB4, DCL1 and DCL4 further strengthen the notion that HYL1 and DCL1, and DRB4 and DCL4, exist as complexes. The presented data suggest that each member of the HYL1/DRB protein family may individually modulate Dicer function through heterodimerization with a Dicer-like protein in vivo.

Indexed as

ArabidopsisArabidopsis ProteinsBinding, CompetitiveCell Cycle ProteinsDimerizationElectrophoresis, Polyacrylamide GelElectrophoretic Mobility Shift AssayGreen Fluorescent ProteinsMicroscopy, FluorescenceOryzaPhylogenyPlant ProteinsProtein BindingRecombinant Fusion ProteinsRibonuclease IIIRNA-Binding ProteinsArabidopsis ProteinsCell Cycle ProteinsDCL1 protein, ArabidopsisGreen Fluorescent ProteinsHYL1 protein, ArabidopsisPlant ProteinsRecombinant Fusion ProteinsRibonuclease IIIRNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID15821876
OpenAlexW2019739870

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.