Evidence map›Paper›PMID 15821136›Full record

ArticleEukaryotic cell2005

Mitochondrial DNA ligases of Trypanosoma brucei.

Nick Downey, Jane C Hines, Krishna M Sinha, Dan S Ray

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 76 citations in OpenAlex.

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  15. A passion for parasites.The Journal of biological chemistry · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nick DowneyMolecular Biology Institute and Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, California 90095-1570, USA.
Jane C Hines
Krishna M Sinha
Dan S Ray
University of California, Los Angeles · USHuman BioMolecular Research Institute · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
REGULATION OF TRYPANOSOME DNA REPLICATIONR01GM053254 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 1995 to 2013
$4.3M
Regulation of Trypanosome DNA ReplicationR56GM053254 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAY, DAN S · 2008 to 2009
$453k
NCI NIH HHS CA-16042NCI NIH HHS P30 CA016042NIAID NIH HHS AI-28687NIGMS NIH HHS GM53254NIGMS NIH HHS R01 GM053254NIGMS NIH HHS R56 GM053254
6 · The paper itself

Abstract

The mitochondrial DNA of Trypanosoma brucei, termed kinetoplast DNA or kDNA, consists of thousands of minicircles and a small number of maxicircles catenated into a single network organized as a nucleoprotein disk at the base of the flagellum. Minicircles are replicated free of the network but still contain nicks and gaps after rejoining to the network. Covalent closure of remaining discontinuities in newly replicated minicircles after their rejoining to the network is delayed until all minicircles have been replicated. The DNA ligase involved in this terminal step in minicircle replication has not been identified. A search of kinetoplastid genome databases has identified two putative DNA ligase genes in tandem. These genes (LIG k alpha and LIG k beta) are highly diverged from mitochondrial and nuclear DNA ligase genes of higher eukaryotes. Expression of epitope-tagged versions of these genes shows that both LIG k alpha and LIG k beta are mitochondrial DNA ligases. Epitope-tagged LIG k alpha localizes throughout the kDNA, whereas LIG k beta shows an antipodal localization close to, but not overlapping, that of topoisomerase II, suggesting that these proteins may be contained in distinct structures or protein complexes. Knockdown of the LIG k alpha mRNA by RNA interference led to a cessation of the release of minicircles from the network and resulted in a reduction in size of the kDNA networks and rapid loss of the kDNA from the cell. Closely related pairs of mitochondrial DNA ligase genes were also identified in Leishmania major and Crithidia fasciculata.

Indexed as

Amino Acid SequenceAnimalsCloning, MolecularDatabases as TopicDNA, KinetoplastDNA LigasesDNA, MitochondrialDNA, ProtozoanDNA Topoisomerases, Type IIGenomeMitochondriaMolecular Sequence DataRNA InterferenceRNA, MessengerSequence Homology, Amino AcidTrypanosoma brucei bruceiDNA, KinetoplastDNA LigasesDNA, MitochondrialDNA, ProtozoanDNA Topoisomerases, Type IIRNA, Messenger

Identifiers

PMID15821136
PMCPMC1087824
OpenAlexW2129825336

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.