Evidence map›Paper›PMID 15814998›Full record

ArticleJournal of clinical microbiology2005

Multilocus sequence typing versus pulsed-field gel electrophoresis for characterization of extended-spectrum beta-lactamase-producing Escherichia coli isolates.

Lucia L Nemoy, Mamuka Kotetishvili, Justine Tigno, Ananda Keefer-Norris, Anthony D Harris, Eli N Perencevich, Judith A Johnson, Dave Torpey, Alexander Sulakvelidze, J Glenn Morris and 1 more

Abstract readComparative Study
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

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  3. The gut microbiota of wild birds undergoing rehabilitation as a reservoir of multidrug-resistant enterococci in a metropolitan area in Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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  5. ArebioRxiv : the preprint server for biology · 2023
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  7. Towards the standardization ofWater research X · 2022
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  8. O-Serogroups and Pathovirotypes ofVeterinary sciences · 2021
    Article
  9. Article
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  11. Emergence of Multidrug-ResistantFrontiers in cellular and infection microbiology · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lucia L NemoyDepartment of Epidemiology and Preventive Medicine, University of Maryland School of Medicine, MSTF Building, Room 9-34, 10 South Pine Street, Baltimore, MD 21201, USA. lnemoy@epi.umaryland.edu
Mamuka Kotetishvili
Justine Tigno
Ananda Keefer-Norris
Anthony D Harris
Eli N Perencevich
Judith A Johnson
Dave Torpey
Alexander Sulakvelidze
J Glenn Morris
O Colin Stine

Funding

Study design importance in analyzing emerging pathogensK23AI001752 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI HARRIS, ANTHONY D · 2001 to 2005
$662k
NIAID NIH HHS 5K23AI001752-02NIAID NIH HHS K23 AI001752
6 · The paper itself

Abstract

Extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli strains are emerging pathogens. Molecular typing of ESBL-producing E. coli is useful for surveillance purposes, to monitor outbreaks and track nosocomial spread. Although pulsed-field gel electrophoresis (PFGE) is the current "gold standard" for bacterial molecular typing, multilocus sequence typing (MLST) may offer advantages. Forty ESBL-producing E. coli isolates were selected at random from a cohort of intensive care unit patients who had active surveillance perirectal cultures done. PFGE identified 19 unique PFGE types (PT) among the 40 isolates; MLST identified 22 unique sequence types. MLST had greater discriminatory ability than PFGE for ESBL-producing E. coli. Simpson's indices of diversity for PFGE and MLST were 0.895 and 0.956, respectively. There were five clonal complexes (CCs) (isolates with differences of no more than two loci) that each contained multiple PT, but each PT was found in only one CC, indicating genetic consistency within a CC. MLST has clear utility in studies of ESBL-producing E. coli, based on a greater discriminatory ability and reproducibility than PFGE and the ability to a priori define genetically related bacterial strains.

Indexed as

Bacterial Typing TechniquesSequence Analysis, DNAbeta-LactamasesCross InfectionDNA, BacterialElectrophoresis, Gel, Pulsed-FieldEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsHumansMolecular Sequence Databeta-LactamasesDNA, BacterialEscherichia coli Proteins

Identifiers

PMID15814998
PMCPMC1081380

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.