Evidence map›Paper›PMID 15814969›Full record

ArticleJournal of clinical microbiology2005

Loop-mediated isothermal amplification method targeting the lytA gene for detection of Streptococcus pneumoniae.

Mitsuko Seki, Yoshihisa Yamashita, Hirotaka Torigoe, Hiromasa Tsuda, Setsuko Sato, Masao Maeno

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Comparative Genotyping of Malaysian Clinical Isolates ofThe Malaysian journal of medical sciences : MJMS · 2025
    Article
  2. Rapid detection ofFrontiers in cellular and infection microbiology · 2025
    Article
  3. A novel LAMP-based assay for the identification ofJournal of clinical microbiology · 2024
    Article
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  12. Rapid visual detection of binary toxin producingExperimental and therapeutic medicine · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mitsuko SekiDepartment of Oral Health Sciences, Nihon University School of Dentistry, 1-8-13 Kanda-Surugadai, Chiyoda-ku, Tokyo 101-8310, Japan. seki-m@dent.nihon-u.ac.jp
Yoshihisa Yamashita
Hirotaka Torigoe
Hiromasa Tsuda
Setsuko Sato
Masao Maeno

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is difficult to separate Streptococcus pneumoniae from the genotypically similar species Streptococcus mitis and Streptococcus oralis, which are commensals of the human oral cavity. A novel nucleic acid amplification technique, loop-mediated isothermal amplification (LAMP), which amplifies DNA under isothermal conditions (63 degrees C) with high specificity, efficiency, and rapidity, was examined regarding its applicability for detecting S. pneumoniae. An S. pneumoniae-specific LAMP primer targeting the lytA gene was designed. The primer specificity was validated using 10 Streptococcus and 7 non-Streptococcus species. Within 60 min, the assay could detect 10 or more copies of purified S. pneumoniae DNA with a sensitivity 1,000 times that of conventional PCR. Clinical isolates of 21 other strains (3 S. oralis, 17 S. mitis, and 1 Streptococcus species) that harbor virulence-factor-encoding genes (lytA or ply) were tried to differentiate S. pneumoniae. The detection of S. pneumoniae in clinical isolates was more selective using the LAMP method than using conventional PCR. Therefore, LAMP appears to be a sensitive and reliable means of diagnosing S. pneumoniae infection.

Indexed as

Bacterial Typing TechniquesBase SequenceChildChild, PreschoolDNA PrimersHumansMolecular Sequence DataN-Acetylmuramoyl-L-alanine AmidaseNucleic Acid Amplification TechniquesPneumococcal InfectionsSensitivity and SpecificitySpecies SpecificityStreptococcus pneumoniaeDNA PrimersN-Acetylmuramoyl-L-alanine Amidase

Identifiers

PMID15814969
PMCPMC1081357

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.