ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005
Cross-species amplification of Medicago truncatula microsatellites across three major pulse crops.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
38 citing papers in PubMed.
- Genetic Diversity and Differentiation of ElevenGenes · 2021Article
- Cross-genera amplification ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.Scientific reports · 2020Article
- Review
- Association mapping unveils favorable alleles for grain iron and zinc concentrations in lentil (Lens culinaris subsp. culinaris).PloS one · 2017Article
- Genetic Mapping of a Major Resistance Gene to Pea Aphid (Acyrthosipon pisum) in the Model Legume Medicago truncatula.International journal of molecular sciences · 2016Article
- Article
- CNMS: The preferred genic markers for comparative genomic, molecular phylogenetic, functional genetic diversity and differential gene regulatory expression analyses in chickpea.Journal of biosciences · 2015Article
- Development and Characterization of Transcription Factor Gene-Derived Microsatellite (TFGM) Markers in Medicago truncatula and Their Transferability in Leguminous and Non-Leguminous Species.Molecules (Basel, Switzerland) · 2015Article
- Cross-amplification of Vicia sativa subsp. sativa microsatellites across 22 other Vicia species.Molecules (Basel, Switzerland) · 2015Article
- Identification and characterization of microsatellites in expressed sequence tags and their cross transferability in different plants.International journal of genomics · 2014Article
- Transferability of molecular markers from major legumes to Lathyrus spp. for their application in mapping and diversity studies.Molecular biology reports · 2014Article
- Transferability of simple sequence repeat (SSR) markers developed in guava (Psidium guajava L.) to four Myrtaceae species.Molecular biology reports · 2013Article
- Development of pineapple microsatellite markers and germplasm genetic diversity analysis.BioMed research international · 2013Article
- Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).DNA research : an international journal for rapid publication of reports on genes and genomes · 2012Article
- Exploring the genetic diversity of Ethiopian grass pea (Lathyrus sativus L.) using EST-SSR markers.Molecular breeding : new strategies in plant improvement · 2012Article
- EST-derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Comparative analysis of miRNAs and their targets across four plant species.BMC research notes · 2011Article
- Molecular mapping for resistance to pea rust caused by Uromyces fabae (Pers.) de-Bary.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Model plants are facilitating the genetic characterization and comparative mapping of a number of traditional crops. Medicago truncatula has been widely accepted as a model plant to this end as it provides the essential tools for multiple aspects of legume genetics and genomics. A large set of markers from highly conserved M. truncatula gene regions is being created and used to establish a worldwide framework for comparative genomic studies in legumes. We have investigated the potential for cross-species amplification of 209 expressed sequence tag (EST)-based and 33 bacterial artificial chromosome (BAC)-based microsatellites from M. truncatula in the three most important European legume pulses-pea, faba bean and chickpea-that might facilitate future comparative mapping. Our results revealed significant transferability of M. truncatula microsatellites to the three pulses (40% in faba bean, 36.3% in chickpea and 37.6% in pea). The percentage of M. truncatula EST-SSRs (simple sequence repeats) amplified in the three crops (39-43%) was twofold higher than that of the genomic SSRs (21-24%). Sequence analysis determined that the level of conservation in the microsatellite motif was very low, while the flanking regions were generally well conserved. The variations in the sequences were mainly due to changes in the number of repeat motifs in the microsatellite region combined with indel and base substitutions. None of the functional microsatellites showed direct polymorphism among the parental genotypes tested, consequently preventing their immediate use for mapping purposes.
Indexed as
Identifiers
15806349What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.