Evidence map›Paper›PMID 15805532›Full record

ArticleJournal of bacteriology2005

Genetic and structural analysis of the Bacteroides conjugative transposon CTn341.

M Bacic, A C Parker, J Stagg, H P Whitley, W G Wells, L A Jacob, C J Smith

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

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  14. Different genetic supports for the tet(S) gene in Enterococci.Antimicrobial agents and chemotherapy · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

M BacicDepartment of Microbiology and Immunology, Brody School of Medicine, East Carolina University, 600 Moye Blvd., Greenville, NC 27834, USA.
A C Parker
J Stagg
H P Whitley
W G Wells
L A Jacob
C J Smith
East Carolina University · US

Funding

B.FRAGILIS MULTIPLE DRUG RESISTANCE-ORIGIN AND CONTROLR01AI028884 · NIAID · EAST CAROLINA UNIVERSITY · PI SMITH, CHARLES J. · 1991 to 2005
$1.0M
NIAID NIH HHS AI-28884NIAID NIH HHS R01 AI028884
6 · The paper itself

Abstract

The genetic structure and functional organization of a Bacteroides conjugative transposon (CTn), CTn341, were determined. CTn341 was originally isolated from a tetracycline-resistant clinical isolate of Bacteroides vulgatus. The element was 51,993 bp long, which included a 5-bp coupling sequence that linked the transposon ends in the circular form. There were 46 genes, and the corresponding gene products fell into three major functional groups: DNA metabolism, regulation and antibiotic resistance, and conjugation. The G + C content and codon usage observed in the functional groups suggested that the groups belong to different genetic lineages, indicating that CTn341 is a composite, modular element. Mutational analysis of genes representing the different functional groups provided evidence for the gene assignments and showed that the basic conjugation and excision genes are conserved among Bacteroides spp. A group IIA1 intron, designated B.f.I1, was found to be inserted into the bmhA methylase gene. Reverse transcriptase PCR analysis of CTn341 RNA showed that B.fr.I1 was functional and was spliced out of the bmhA gene. Six related CTn-like elements were found in the genome sequences of Bacteroides fragilis NCTC9343 and Bacteroides thetaiotaomicron VPI5482. The putative elements were similar to CTn341 primarily in the tra and mob regions and in the exc gene, and several appeared to contain intron elements. Our data provide the first reported sequence for a complete Bacteroides CTn, and they should be of considerable benefit to further functional and genetic analyses of antibiotic resistance elements and genome evolution in Bacteroides.

Indexed as

Conjugation, GeneticBacteroidesDNA, BacterialDNA, CircularDNA Transposable ElementsGene OrderGenes, BacterialGenome, BacterialMolecular Sequence DataDNA, BacterialDNA, CircularDNA Transposable Elements

Identifiers

PMID15805532
PMCPMC1070377
OpenAlexW2129342151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.