Evidence map›Paper›PMID 15805168›Full record

ArticleBiophysical journal2005

Unraveling protein-protein interactions in living cells with fluorescence fluctuation brightness analysis.

Yan Chen, Li-Na Wei, Joachim D Müller

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The retinoid X receptors and their ligands.Biochimica et biophysica acta · 2012
    Review
  12. Article
  13. Heterospecies partition analysis reveals binding curve and stoichiometry of protein interactions in living cells.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Determining the stoichiometry of protein heterocomplexes in living cells with fluorescence fluctuation spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yan ChenSchool of Physics and Astronomy, University of Minnesota, Minneapolis, USA. chen@physics.umn.edu
Li-Na Wei
Joachim D Müller
University of Minnesota · US

Funding

Studies of nuclear receptor corepressor, NRIP1, in vitamin A signaling pathwaysR01DK060521 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WEI, LI-NA · 2002 to 2022
$6.9M
TR2 NUCLEAR RECEPTOR IN VITAMIN A SIGNALING PATHWAYSR01DK054733 · NIDDK · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WEI, LI-NA · 1999 to 2021
$5.7M
In vivo Fluorescence Fluctuation Spectroscopy - Administrative SupplementR01GM064589 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUELLER, JOACHIM D · 2002 to 2019
$4.6M
Studies of the Mouse Kappa Opioid Receptor GeneK02DA013926 · NIDA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WEI, LI-NA · 2002 to 2011
$1.2M
In Vivo fluorescence correlation spectroscopyF32GM020853 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI CHEN, YAN · 2001 to 2003
$136k
NIDA NIH HHS K02 DA013926NIDA NIH HHS K02DA13926NIDDK NIH HHS DK54733NIDDK NIH HHS DK60521NIDDK NIH HHS R01 DK054733NIDDK NIH HHS R01 DK060521NIGMS NIH HHS F32 GM020853NIGMS NIH HHS GM020853NIGMS NIH HHS GM64589NIGMS NIH HHS R01 GM064589
6 · The paper itself

Abstract

Fluorescence correlation spectroscopy is a potentially powerful tool for measuring protein-protein interactions directly in single living cells. We previously reported on the detection of homodimer formation in cells using molecular brightness analysis. Here, we extend the technique to detect binding between different proteins. Proteins are labeled with the fluorescent markers YFP and CFP. We first determine the coexpression ratio of both proteins by measuring the intensity ratio with a dual-color setup. The effect of fluorescence resonance energy transfer on the intensity ratio is explicitly taken into account. The brightness of cells coexpressing both proteins is measured in a single-color setup. Selecting the laser wavelength of the two-photon light source allows us to either coexcite both proteins or to selectively excite YFP-labeled proteins. This approach enables us to distinguish between homodimer and heterodimer formation. We first present the theory and then demonstrate experimental feasibility using the ligand binding domains of retinoic acid receptor (RARLBD) and of retinoid X receptor (RXRLBD). Both proteins form heterodimers, and RXRLBD also forms homodimers in the presence of its agonist. We explore binding between these proteins in the presence and absence of RXR agonist. Our results demonstrate that brightness analysis offers a quantitative method for determining protein interactions in cells.

Indexed as

AnimalsBacterial ProteinsBinding SitesDimerizationFluorescenceFluorescence Resonance Energy TransferGreen Fluorescent ProteinsIn Vitro TechniquesLuminescent ProteinsModels, MolecularProtein BindingProteinsProtein Structure, TertiaryReceptors, Retinoic AcidRecombinant Fusion ProteinsRetinoid X ReceptorsBacterial ProteinsCyan Fluorescent ProteinGreen Fluorescent ProteinsLuminescent ProteinsProteinsReceptors, Retinoic AcidRecombinant Fusion ProteinsRetinoid X Receptorsyellow fluorescent protein, Bacteria

Identifiers

PMID15805168
PMCPMC1305664
OpenAlexW2003049706

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.