Evidence map›Paper›PMID 15803393›Full record

ArticleJournal of biomolecular NMR2005

Structure of calmodulin complexed with an olfactory CNG channel fragment and role of the central linker: residual dipolar couplings to evaluate calmodulin binding modes outside the kinase family.

Gian Marco Contessa, Maria Orsale, Sonia Melino, Vincent Torre, Maurizio Paci, Alessandro Desideri, Daniel O Cicero

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of biomolecular NMR, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

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  6. A cryptophane-based "turn-on"Organic & biomolecular chemistry · 2017
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  11. Structural insights into neuronal K+ channel-calmodulin complexes.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Article
  13. Thioamide quenching of intrinsic protein fluorescence.Chemical communications (Cambridge, England) · 2012
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. EF-hand protein dynamics and evolution of calcium signal transduction: an NMR view.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2006
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Gian Marco ContessaDepartment of Chemical Sciences and Technologies, University of Rome Tor Vergata, via della Ricerca Scientifica, 00133, Rome, Italy.
Maria Orsale
Sonia Melino
Vincent Torre
Maurizio Paci
Alessandro Desideri
Daniel O Cicero
University of Rome Tor Vergata · ITScuola Internazionale Superiore di Studi Avanzati · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The NMR high-resolution structure of calmodulin complexed with a fragment of the olfactory cyclic-nucleotide gated channel is described. This structure shows features that are unique for this complex, including an active role of the linker connecting the N- and C-lobes of calmodulin upon binding of the peptide. Such linker is not only involved in the formation of an hydrophobic pocket to accommodate a bulky peptide residue, but it also provides a positively charged region complementary to a negative charge of the target. This complex of calmodulin with a target not belonging to the kinase family was used to test the residual dipolar coupling (RDC) approach for the determination of calmodulin binding modes to peptides. Although the complex here characterized belongs to the (1--14) family, high Q values were obtained with all the 1:1 complexes for which crystalline structures are available. Reduction of the RDC data set used for the correlation analysis to structured regions of the complex allowed a clear identification of the binding mode. Excluded regions comprise calcium binding loops and loops connecting the EF-hand motifs.

Indexed as

Amino Acid MotifsAmino Acids, AcidicAmino Acids, AromaticAmino Acids, BasicAmino Acid SequenceAnimalsBinding SitesCalmodulinCyclic Nucleotide-Gated Cation ChannelsHydrogen BondingHydrophobic and Hydrophilic InteractionsIon ChannelsModels, ChemicalModels, MolecularMolecular Sequence DataNitrogen RadioisotopesAmino Acids, AcidicAmino Acids, AromaticAmino Acids, BasicCalmodulinCyclic Nucleotide-Gated Cation ChannelsIon ChannelsNitrogen RadioisotopesPeptide FragmentsProtein KinasesRecombinant Fusion Proteins

Identifiers

PMID15803393
OpenAlexW2048803110

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.