Evidence map›Paper›PMID 15795310›Full record

ArticleThe Journal of general physiology2005

Secondary structure and gating rearrangements of transmembrane segments in rat P2X4 receptor channels.

Shai D Silberberg, Tsg-Hui Chang, Kenton J Swartz

Abstract readComparative Study
In one paragraph

Article in The Journal of general physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Inflammation-induced upregulation of P2XAmerican journal of physiology. Lung cellular and molecular physiology · 2019
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Inter- and intrasubunit interactions between transmembrane helices in the open state of P2X receptor channels.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shai D SilberbergMolecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA. silberbs@ninds.nih.gov
Tsg-Hui Chang
Kenton J Swartz

Funding

Gating mechanisms and pharmacology of P2X receptor channelsZIANS003018 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI SWARTZ, KENTON · 2009 to 2025
$13.8M
PROBING THE STRUCTURE AND FUNCTION OF POTASSIUM AND CALCIUM CHANNELSZ01NS002945 · NINDS · NEUROLOGICAL DISORDERS AND STROKE · PI SWARTZ, KENTON J · 1997 to 2008
$1.9M
Intramural NIH HHS ZIA NS003018
6 · The paper itself

Abstract

P2X receptors are cation selective channels that are activated by extracellular nucleotides. These channels are likely formed by three identical or related subunits, each having two transmembrane segments (TM1 and TM2). To identify regions that undergo rearrangement during gating and to probe their secondary structure, we performed tryptophan scanning mutagenesis on the two putative TMs of the rat P2X4 receptor channel. Mutant channels were expressed in Xenopus oocytes, concentration-response relationships constructed for ATP, and the EC50 estimated by fitting the Hill equation to the data. Of the 22 mutations in TM1 and 24 in TM2, all but one in TM1 and seven in TM2 result in functional channels. Interestingly, the majority of the functional mutants display an increased sensitivity to ATP, and in general these perturbations are more pronounced for TM2 when compared with TM1. For TM1 and for the outer half of TM2, the perturbations are consistent with these regions adopting alpha-helical secondary structures. In addition, the greatest perturbations in the gating equilibrium occur for mutations near the outer ends of both TM1 and TM2. Surface biotinylation experiments reveal that all the nonfunctional mutants traffic to the surface membrane at levels comparable to the WT channel, suggesting that these mutations likely disrupt ion conduction or gating. Taken together, these results suggest that the outer parts of TM1 and TM2 are helical and that they move during activation. The observation that the majority of nonconducting mutations are clustered toward the inner end of TM2 suggests a critical functional role for this region.

Indexed as

Models, BiologicalModels, ChemicalModels, MolecularAmino Acid SequenceAmino Acid SubstitutionAnimalsCell MembraneIon Channel GatingMolecular Sequence DataMutagenesis, Site-DirectedOocytesProtein Structure, SecondaryRatsReceptors, Purinergic P2Receptors, Purinergic P2X4Structure-Activity RelationshipP2rx4 protein, ratReceptors, Purinergic P2Receptors, Purinergic P2X4

Identifiers

PMID15795310
PMCPMC2217512

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.