Evidence map›Paper›PMID 15795274›Full record

ArticleJournal of virology2005

Retroviral recombination in vivo: viral replication patterns and genetic structure of simian immunodeficiency virus (SIV) populations in rhesus macaques after simultaneous or sequential intravaginal inoculation with SIVmac239Deltavpx/Deltavpr and SIVmac239Deltanef.

Eun-Young Kim, Marc Busch, Kristina Abel, Linda Fritts, Patty Bustamante, Jenny Stanton, Ding Lu, Samuel Wu, Jenny Glowczwskie, Tracy Rourke and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
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  4. HIV-1 pathogenesis: the virus.Cold Spring Harbor perspectives in medicine · 2012
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  14. Is an HIV vaccine possible?The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases · 2009
    Review
  15. Article
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  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Eun-Young KimDivision of Infectious Diseases, The Feinberg School of Medicine at Northwestern University, Chicago, Illinois, USA.
Marc Busch
Kristina Abel
Linda Fritts
Patty Bustamante
Jenny Stanton
Ding Lu
Samuel Wu
Jenny Glowczwskie
Tracy Rourke
Derek Bogdan
Mike Piatak
Jeffrey D Lifson
Ronald C Desrosiers
Steven Wolinsky
Christopher J Miller
Northwestern University · USOregon National Primate Research Center · USScience Applications International Corporation (United States) · US

Funding

ZONA PELLUCIDA PEPTIDES AS IMMUNOCONTRACEPTIVE ANTIGENSP51RR000169 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI HYDE, DALLAS MELVIN · 1985 to 2011
$126.2M
Mechanisms of Mucosal Immunity to HIV Vaccines in MiceU19AI051596 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI MILLER, CHRISTOPHER JAMES · 2002 to 2004
$6.1M
NCI NIH HHS N01 CO012400NCRR NIH HHS P51 RR000169NIAID NIH HHS U19 AI051596
6 · The paper itself

Abstract

To characterize the occurrence, frequency, and kinetics of retroviral recombination in vivo, we intravaginally inoculated rhesus macaques, either simultaneously or sequentially, with attenuated simian immunodeficiency virus (SIV) strains having complementary deletions in their accessory genes and various degrees of replication impairment. In monkeys inoculated simultaneously with SIVmac239Deltavpx/Deltavpr and SIVmac239Deltanef, recombinant wild-type (wt) virus and wild-type levels of plasma viral RNA (vRNA) were detected in blood by 2 weeks postinoculation. In monkeys inoculated first with SIVmac239Deltavpx/Deltavpr and then with SIVmac239Deltanef, recombination occurred but was associated with lower plasma vRNA levels than plasma vRNA levels seen for monkeys inoculated intravaginally with wt SIVmac239. In one monkey, recombination occurred 6 weeks after the challenge with SIVmac239Deltanef when plasma SIVmac239Deltavpx/Deltavpr RNA levels were undetectable. In monkeys inoculated first with the more highly replicating strain, SIVmac239Deltanef, and then with SIVmac239Deltavpx/Deltavpr, wild-type recombinant virus was not detected in blood or tissues. Instead, a virus that had repaired the deletion in the nef gene by a compensatory mutation was found in one animal. Overall, recombinant SIV was eventually found in four of six animals intravaginally inoculated with the two SIVmac239 deletion mutants. These findings show that recombination can occur readily in vivo after mucosal SIV exposure and thus contributes to the generation of viral genetic diversity and enhancement of viral fitness.

Indexed as

Genes, nefGenes, ViralAnimalsFemaleGene Products, envGene Products, vprGenetic VariationGenotypeInjectionsInterferon-gammaMacaca mulattaRetroviridae Proteins, OncogenicRNA, ViralSequence DeletionSimian Immunodeficiency VirusVaginaGene Products, envGene Products, vprInterferon-gammaRetroviridae Proteins, OncogenicRNA, Viraltransmembrane protein, Simian immunodeficiency virusViral Fusion Proteins

Identifiers

PMID15795274
PMCPMC1069535
OpenAlexW2135598416

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.