Evidence map›Paper›PMID 15790562›Full record

ArticleThe Journal of biological chemistry2005

Lys6-modified ubiquitin inhibits ubiquitin-dependent protein degradation.

Fu Shang, Gejing Deng, Qing Liu, Weimin Guo, Arthur L Haas, Bernat Crosas, Daniel Finley, Allen Taylor

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 86 citations in OpenAlex.

  1. Review
  2. Review
  3. Glycative stress as a cause of macular degeneration.Progress in retinal and eye research · 2024
    Review
  4. Article
  5. Proteostasis in aging-associated ocular disease.Molecular aspects of medicine · 2022
    Review
  6. Functional roles of E3 ubiquitin ligases in prostate cancer.Journal of molecular medicine (Berlin, Germany) · 2022
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Stabilization of p27FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Altered ubiquitin causes perturbed calcium homeostasis, hyperactivation of calpain, dysregulated differentiation, and cataract.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Fu ShangLaboratory for Nutrition and Vision Research, Jean Mayer United States Department of Agriculture Human Nutrition Research Center on Aging, Tufts University, Boston, Massachusetts 02111, USA. fu.shang@tufts.edu
Gejing Deng
Qing Liu
Weimin Guo
Arthur L Haas
Bernat Crosas
Daniel Finley
Allen Taylor
Harvard University · USJean Mayer Human Nutrition Research Center on Aging · USTufts University · USLouisiana State University Health Sciences Center New Orleans · USUnited States Department of Agriculture · US

Funding

Ubiquitin Function In Eye LensR01EY013250 · NEI · TUFTS UNIVERSITY BOSTON · PI TAYLOR, ALLEN · 2001 to 2012
$4.0M
ATP-UBIQUITIN-DEPENDENT PROTEOLYSISR01GM034009 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI HAAS, ARTHUR L · 1985 to 2011
$3.0M
Role of ubiqutin in quality control of lens proteinsR01EY011717 · NEI · TUFTS UNIVERSITY BOSTON · PI SHANG, FU · 2003 to 2010
$1.8M
UBIQUITIN DEPENDENT PATHWAY AND LENS EPITHELIUMR29EY011717 · NEI · TUFTS UNIVERSITY BOSTON · PI SHANG, FU · 1998 to 2002
$381k
NEI NIH HHS EY11717NEI NIH HHS EY13250NEI NIH HHS R01 EY011717NEI NIH HHS R01 EY011717-06A1NEI NIH HHS R01 EY011717-07NEI NIH HHS R01 EY013250NEI NIH HHS R29 EY011717NIGMS NIH HHS GM34009NIGMS NIH HHS R01 GM034009
6 · The paper itself

Abstract

Ubiquitin plays essential roles in various cellular processes; therefore, it is of keen interest to study the structure-function relationship of ubiquitin itself. We investigated the modification of Lys(6) of ubiquitin and its physiological consequences. Mass spectrometry-based peptide mapping and N-terminal sequencing demonstrated that, of the 7 Lys residues in ubiquitin, Lys(6) was the most readily labeled with sulfosuccinimidobiotin. Lys(6)-biotinylated ubiquitin was incorporated into high molecular mass ubiquitin conjugates as efficiently as unmodified ubiquitin. However, Lys(6)-biotinylated ubiquitin inhibited ubiquitin-dependent proteolysis, as conjugates formed with Lys(6)-biotinylated ubiquitin were resistant to proteasomal degradation. Ubiquitins with a mutation of Lys(6) had similar phenotypes as Lys(6)-biotinylated ubiquitin. Lys(6) mutant ubiquitins (K6A, K6R, and K6W) also inhibited ATP-dependent proteolysis and caused accumulation of ubiquitin conjugates. Conjugates formed with K6W mutant ubiquitin were also resistant to proteasomal degradation. The dominant-negative effect of Lys(6)-modified ubiquitin was further demonstrated in intact cells. Overexpression of K6W mutant ubiquitin resulted in accumulation of intracellular ubiquitin conjugates, stabilization of typical substrates for ubiquitin-dependent proteolysis, and enhanced susceptibility to oxidative stress. Taken together, these results show that Lys(6)-modified ubiquitin is a potent and specific inhibitor of ubiquitin-mediated protein degradation.

Indexed as

Adenosine TriphosphateAmino Acid SequenceAnimalsBinding SitesBiotinBiotinylationCarbon-Nitrogen LyasesCattleEscherichia coliHumansIodine RadioisotopesLactalbuminLysineMiceMolecular WeightMutagenesis, Site-DirectedAdenosine TriphosphateBiotinbiotinyl-N-hydroxysulfosuccinimide esterCarbon-Nitrogen LyasesIodine RadioisotopesisopeptidaseLactalbuminLysinePeptide HydrolasesProtease InhibitorsProteasome Endopeptidase ComplexProteinsRecombinant ProteinsSuccinimidesUbiquitin

Identifiers

PMID15790562
PMCPMC1382285
OpenAlexW2120793206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.