Evidence map›Paper›PMID 15790315›Full record

ArticleThe Biochemical journal2005

Architecture of bacterial replication initiation complexes: orisomes from four unrelated bacteria.

Anna Zawilak-Pawlik, Agnieszka Kois, Jerzy Majka, Dagmara Jakimowicz, Aleksandra Smulczyk-Krawczyszyn, Walter Messer, Jolanta Zakrzewska-Czerwińska

Abstract read
In one paragraph

Article in The Biochemical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Review
  3. Identification of the Unwinding Region in theFrontiers in microbiology · 2020
    Article
  4. Origins of DNA replication.PLoS genetics · 2019
    Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. The orisome: structure and function.Frontiers in microbiology · 2015
    Review
  13. Article
  14. Article
  15. Review
  16. DNA replication origins.Cold Spring Harbor perspectives in biology · 2013
    Review
  17. Mechanisms for initiating cellular DNA replication.Annual review of biochemistry · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anna Zawilak-PawlikLudwik Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, ul. Weigla 12, 53-114 Wrocław, Poland.
Agnieszka Kois
Jerzy Majka
Dagmara Jakimowicz
Aleksandra Smulczyk-Krawczyszyn
Walter Messer
Jolanta Zakrzewska-Czerwińska

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial chromosome replication is mediated by single initiator protein, DnaA, that interacts specifically with multiple DnaA boxes located within the origin (oriC). We compared the architecture of the DnaA-origin complexes of evolutionarily distantly related eubacteria: two Gram-negative organisms, Escherichia coli and Helicobacter pylori, and two Gram-positive organisms, Mycobacterium tuberculosis and Streptomyces coelicolor. Their origins vary in size (from approx. 200 to 1000 bp) and number of DnaA boxes (from 5 to 19). The results indicate that: (i) different DnaA proteins exhibit various affinities toward single DnaA boxes, (ii) spatial arrangement of two DnaA boxes is crucial for the H. pylori and S. coelicolor DnaA proteins, but not for E. coli and M. tuberculosis proteins, and (iii) the oriC regions are optimally adjusted to their cognate DnaA proteins. The primary functions of multiple DnaA boxes are to determine the positioning and order of assembly of the DnaA molecules. Gradual transition from the sequence-specific binding of the DnaA protein to binding through co-operative protein-protein interactions seems to be a common conserved strategy to generate oligomeric initiator complexes bound to multiple sites within the chromosomal, plasmid and virial origins.

Indexed as

Base SequenceAmino Acid SequenceBacterial ProteinsCell DivisionDNA, BacterialDNA-Binding ProteinsDNA ReplicationEscherichia coliGene Expression Regulation, BacterialHelicobacter pyloriMolecular Sequence DataMycobacterium tuberculosisOrigin Recognition ComplexReplication OriginSequence Homology, Amino AcidSpecies SpecificityBacterial ProteinsDnaA protein, BacteriaDNA, BacterialDNA-Binding ProteinsOriC chromosomal replication originOrigin Recognition Complex

Identifiers

PMID15790315
PMCPMC1175125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.