Evidence map›Paper›PMID 15788562›Full record

ArticleMolecular biology of the cell2005

Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells.

Rut Valgardsdottir, Ilaria Chiodi, Manuela Giordano, Fabio Cobianchi, Silvano Riva, Giuseppe Biamonti

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 133 citations in OpenAlex.

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  15. RNAs as Regulators of Cellular Matchmaking.Frontiers in molecular biosciences · 2021
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rut ValgardsdottirIstituto di Genetica Molecolare, Consiglio Nazionale delle Ricerche, 27100 Pavia, Italy.
Ilaria Chiodi
Manuela Giordano
Fabio Cobianchi
Silvano Riva
Giuseppe Biamonti
Istituto di Genetica Molecolare · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermal and chemical stresses induce the formation in human cells of novel and transient nuclear structures called nuclear stress bodies (nSBs). These contain heat shock factor 1 (HSF-1) and a specific subset of pre-mRNA processing factors. Nuclear stress bodies are assembled on specific pericentromeric heterochromatic domains containing satellite III (SatIII) DNA. In response to stress, these domains change their epigenetic status from heterochromatin to euchromatin and are transcribed in poly-adenylated RNAs that remain associated with nSBs. In this article, we describe the cloning, sequencing, and functional characterization of these transcripts. They are composed of SatIII repeats and originate from the transcription of multiple sites within the SatIII arrays. Interestingly, the level of SatIII RNAs can be down-regulated both by antisense oligonucleotides and small interfering RNAs (siRNA). Knockdown of SatIII RNA by siRNAs requires the activity of Argonaute 2, a component of the RNA-induced silencing complex. Down-regulation of satellite III RNAs significantly affects the recruitment of RNA processing factors to nSBs without altering the association of HSF-1 with these structures nor the presence of acetylated histones within nSBs. Thus, satellite III RNAs have a major role in the formation of nSBs.

Indexed as

Transcription, GeneticAnimalsArgonaute ProteinsCell FusionCell NucleusCell Nucleus StructuresCoculture TechniquesDNA-Binding ProteinsDNA, SatelliteDose-Response Relationship, DrugDown-RegulationEuchromatinEukaryotic Initiation Factor-2Heat-Shock ResponseHeat Shock Transcription FactorsHeLa CellsAGO2 protein, humanArgonaute ProteinsDNA-Binding ProteinsDNA, SatelliteEuchromatinEukaryotic Initiation Factor-2Heat Shock Transcription FactorsHeterochromatinOligonucleotides, AntisensePeptide Initiation FactorsRNA-Induced Silencing ComplexRNA, Small InterferingRNA, UntranslatedTranscription Factors

Identifiers

PMID15788562
PMCPMC1142408
OpenAlexW2106476684

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.