Evidence map›Paper›PMID 15786545›Full record

ArticleWorld journal of gastroenterology2005

"Defective" mutations of hepatitis D viruses in chronic hepatitis D patients.

Jaw-Ching Wu, Sheng-Chieh Hsu, Shen-Yung Wang, Yi-Hsiang Huang, I-Jane Sheen, Hsuan-Hui Shih, Wan-Jr Syu

Open access · bronzeAbstract read
In one paragraph

Article in World journal of gastroenterology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Jaw-Ching WuInstitute of Clinical Medicine, National Yang-Ming University, Taipei 112, Taiwan, China. jcwu@vghtpe.gov.tw
Sheng-Chieh Hsu
Shen-Yung Wang
Yi-Hsiang Huang
I-Jane Sheen
Hsuan-Hui Shih
Wan-Jr Syu
National Science and Technology Council · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo verify whether "defective" mutations existed in hepatitis D virus (HDV).

methodsHepatitis delta antigen (HDAg)-coding sequences were amplified using Pfu DNA polymerases with proof-reading activities from sera of five patients with chronic hepatitis D. Multiple colonies were sequenced for each patient. Pfu analyzed a total of 270 HDV clones. Three representative defective HDV clones were constructed in expression plasmids and transfected into a human hepatoma cell line. Cellular proteins were extracted and analyzed by Western blot.

resultsFour of five cases (80%) showed defective HDV genomes in their sera. The percentage of defective genomes was 3.7% (10/270). The majority (90%) of the defective mutations were insertions or deletions that resulted in frameshift and abnormal stop translation of the HDAg. The predicted mutated HDAg ranged from 45 amino acids to >214 amino acids in length. Various domains of HDAg associated with viral replication or packaging were affected in different HDV isolates. Western blot analysis showed defected HDAg in predicted positions.

conclusion"Defective" viruses do exist in chronic HDV infected patients, but represented as minor strains. The clinical significance of the "defected" HDV needs further study to evaluate.

Indexed as

Frameshift MutationGene DeletionAmino Acid SequenceCarcinoma, HepatocellularCell Line, TumorChronic DiseaseDNA, ViralGenome, ViralHepatitis D, ChronicHepatitis delta AntigensHepatitis Delta VirusHumansLiver NeoplasmsMolecular Sequence DataDNA, ViralHepatitis delta Antigens

Identifiers

PMID15786545
PMCPMC4305949
OpenAlexW2164587376

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.