Evidence map›Paper›PMID 15781713›Full record

ArticleGenetics2005

The origin of subfunctions and modular gene regulation.

Allan Force, William A Cresko, F Bryan Pickett, Steven R Proulx, Chris Amemiya, Michael Lynch

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 118 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. A synthetic synthesis to explore animal evolution and development.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  5. Frontiers in plant science · 2019
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Evolutionary cell biology: two origins, one objective.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  13. Integrated phenotypes: understanding trait covariation in plants and animals.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Review
  14. Review
  15. Article
  16. Large scale of human duplicate genes divergence.Journal of molecular evolution · 2012
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Allan ForceBenaroya Research Institute at Virginia Mason, Seattle, Washington 98101, USA. force@vmresearch.org
William A Cresko
F Bryan Pickett
Steven R Proulx
Chris Amemiya
Michael Lynch
University of Oregon · USBenaroya Research InstituteIndiana University Bloomington · USLoyola University Chicago · USVirginia Mason Medical Center · US

Funding

Genomics Resources and Infrastucture for the ZebrafishR24RR014085 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AMEMIYA, CHRIS T. · 2000 to 2011
$3.3M
COOPERATIVE AGREEMENT: VIRGINIA MASON BAC LIBRARY RESO*U01HG002526 · NHGRI · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI AMEMIYA, CHRIS T. · 2002 to 2006
$3.3M
Arrested Development of ArabidopsisR15GM061620 · NIGMS · LOYOLA UNIVERSITY OF CHICAGO · PI PICKETT, F. BRYAN · 2001 to 2003
$296k
QTL MAPPING IN THREESPINE STICKLEBACKF32GM020892 · NIGMS · UNIVERSITY OF OREGON · PI CRESKO, WILLIAM A · 2001 to 2003
$118k
NCRR NIH HHS R24 RR014085NCRR NIH HHS RR14085NHGRI NIH HHS HG02526-01NHGRI NIH HHS U01 HG002526NIGMS NIH HHS 2R15GM061620-02NIGMS NIH HHS 5F32GM020892NIGMS NIH HHS F32 GM020892NIGMS NIH HHS R15 GM061620
6 · The paper itself

Abstract

Evolutionary explanations for the origin of modularity in genetic and developmental pathways generally assume that modularity confers a selective advantage. However, our results suggest that even in the absence of any direct selective advantage, genotypic modularity may increase through the formation of new subfunctions under near-neutral processes. Two subfunctions may be formed from a single ancestral subfunction by the process of fission. Subfunction fission occurs when multiple functions under unified genetic control become subdivided into more restricted functions under independent genetic control. Provided that population size is sufficiently small, random genetic drift and mutation can conspire to produce changes in the number of subfunctions in the genome of a species without necessarily altering the phenotype. Extensive genotypic modularity may then accrue in a near-neutral fashion in permissive population-genetic environments, potentially opening novel pathways to morphological evolution. Many aspects of gene complexity in multicellular eukaryotes may have arisen passively as population size reductions accompanied increases in organism size, with the adaptive exploitation of such complexity occurring secondarily.

Indexed as

Models, GeneticBiological EvolutionData Interpretation, StatisticalEnhancer Elements, GeneticGene Expression RegulationGenetic VariationMutationPopulationTranscription FactorsTranscription Factors

Identifiers

PMID15781713
PMCPMC1449736
OpenAlexW2143738246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.