Evidence map›Paper›PMID 15775978›Full record

ArticleThe EMBO journal2005

LdpA: a component of the circadian clock senses redox state of the cell.

Natalia B Ivleva, Matthew R Bramlett, Paul A Lindahl, Susan S Golden

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 135 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Improving productivity of citramalate from COBiotechnology for biofuels and bioproducts · 2024
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  8. The circadian clock of the bacteriumScience advances · 2023
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  9. Synchronization of the circadian clock to the environment tracked in real time.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Construction of an artificial consortium ofFrontiers in microbiology · 2022
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Rubisco accumulation factor 1 (Raf1) plays essential roles in mediating Rubisco assembly and carboxysome biogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Article
  19. Article
  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Natalia B IvlevaDepartment of Biology, Texas A&M University, College Station, TX 77843-3258, USA.
Matthew R Bramlett
Paul A Lindahl
Susan S Golden
Texas A&M University · US

Funding

THE PATHWAY THAT SETS THE CYANOBACTERIAL CIRCADIAN CLOCKR01GM062419 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOLDEN, SUSAN S · 2001 to 2015
$3.9M
NIGMS NIH HHS GM62419NIGMS NIH HHS R01 GM062419
6 · The paper itself

Abstract

The endogenous 24-h (circadian) rhythms exhibited by the cyanobacterium Synechococcus elongatus PCC 7942 and other organisms are entrained by a variety of environmental factors. In cyanobacteria, the mechanism that transduces environmental input signals to the central oscillator of the clock is not known. An earlier study identified ldpA as a gene involved in light-dependent modulation of the circadian period, and a candidate member of a clock-entraining input pathway. Here, we report that the LdpA protein is sensitive to the redox state of the cell and exhibits electron paramagnetic resonance spectra consistent with the presence of two Fe4S4 clusters. Moreover, LdpA copurifies with proteins previously shown to be integral parts of the circadian mechanism. We also demonstrate that LdpA affects both the absolute level and light-dependent variation in abundance of CikA, a key input pathway component. The data suggest a novel input pathway to the circadian oscillator in which LdpA is a component of the clock protein complex that senses the redox state of a cell.

Indexed as

Bacterial ProteinsBiological ClocksCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsGene SilencingIntracellular Signaling Peptides and ProteinsIron-Sulfur ProteinsLightOxidation-ReductionProtein KinasesSynechococcusTranscriptional ActivationBacterial ProteinsCikA protein, bacteriaCircadian Rhythm Signaling Peptides and ProteinsIntracellular Signaling Peptides and ProteinsIron-Sulfur ProteinsKaiB protein, cyanobacteriaKaiC protein, cyanobacteriaprotein kinase modulatorProtein Kinases

Identifiers

PMID15775978
PMCPMC556408
OpenAlexW2100695812

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.