Evidence map›Paper›PMID 15774901›Full record

ArticleJournal of bacteriology2005

Structural and genetic characterization of the Shigella boydii type 10 and type 6 O antigens.

Sof'ya N Senchenkova, Lu Feng, Jinghua Yang, Alexander S Shashkov, Jiansong Cheng, Dan Liu, Yuriy A Knirel, Peter R Reeves, Qi Jin, Qiang Ye and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Cluster-specific gene markers enhanceMicrobial genomics · 2021
    Article
  3. Article
  4. Review
  5. Applied and environmental microbiology · 2019
    Article
  6. Shigella Diversity and Changing Landscape: Insights for the Twenty-First Century.Frontiers in cellular and infection microbiology · 2016
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Sof'ya N SenchenkovaN. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russian Federation.
Lu Feng
Jinghua Yang
Alexander S Shashkov
Jiansong Cheng
Dan Liu
Yuriy A Knirel
Peter R Reeves
Qi Jin
Qiang Ye
Lei Wang
Nankai University · CNN.D. Zelinsky Institute of Organic Chemistry · RUNational Institutes for Food and Drug Control · CNUniversity of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Comparison of the O antigens of Shigella boydii types 10 and 6 by chemical analysis and nuclear magnetic resonance spectroscopy showed that their structures are similar, with the only difference being the presence or absence of d-ribofuranose, which is the immunodominant sugar in S. boydii type 10. In S. boydii type 6, a residue previously reported as alpha-d-GlcpA, was shown to be beta-d-GlcpA as in S. boydii type 10. S. boydii types 10 and 6 are reported not to cross-react serologically, and the role of d-ribofuranose in the specificity of S. boydii was confirmed by making a mutant of type 10 that lacked d-ribofuranose. However, S. boydii type 11, which has a d-ribofuranose but with different linkage does show cross-reaction with type 10. The O-antigen gene loci of S. boydii types 10 and 6 were shown to be virtually identical except that orf8 (wbaM), which was confirmed as the ribofuranosyltransferase gene, is interrupted by IS629 in type 6. Therefore, it is proposed that the O-antigen gene cluster of S. boydii type 6 was derived from type 10 by an IS element insertion.

Indexed as

Amino Acid SequenceBase SequenceEvolution, MolecularMolecular Sequence DataMultigene FamilyO AntigensShigella boydiiO Antigens

Identifiers

PMID15774901
PMCPMC1065213
OpenAlexW2164439056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.