Evidence map›Paper›PMID 15774890›Full record

ArticleJournal of bacteriology2005

Analysis of the hypervariable region of the Salmonella enterica genome associated with tRNA(leuX).

Anne L Bishop, Stephen Baker, Sara Jenks, Maria Fookes, Peadar O Gaora, Derek Pickard, Muna Anjum, Jeremy Farrar, Tran T Hien, Al Ivens and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
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  7. Review
  8. Frontiers in microbiology · 2019
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  10. The Homolog of the GeneInfection and immunity · 2018
    Article
  11. Frontiers in microbiology · 2017
    Article
  12. Novel genomic island modifies DNA with 7-deazaguanine derivatives.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Anne L BishopThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom. gd1@sanger.ac.uk.
Stephen Baker
Sara Jenks
Maria Fookes
Peadar O Gaora
Derek Pickard
Muna Anjum
Jeremy Farrar
Tran T Hien
Al Ivens
Gordon Dougan
Wellcome Sanger Institute · GBImperial College London · GBHospital for Tropical Diseases · VNOxford University Clinical Research Unit · VNVeterinary Medicines Directorate · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The divergence of Salmonella enterica and Escherichia coli is estimated to have occurred approximately 140 million years ago. Despite this evolutionary distance, the genomes of these two species still share extensive synteny and homology. However, there are significant differences between the two species in terms of genes putatively acquired via various horizontal transfer events. Here we report on the composition and distribution across the Salmonella genus of a chromosomal region designated SPI-10 in Salmonella enterica serovar Typhi and located adjacent to tRNA(leuX). We find that across the Salmonella genus the tRNA(leuX) region is a hypervariable hot spot for horizontal gene transfer; different isolates from the same S. enterica serovar can exhibit significant variation in this region. Many P4 phage, plasmid, and transposable element-associated genes are found adjacent to tRNA(leuX) in both Salmonella and E. coli, suggesting that these mobile genetic elements have played a major role in driving the variability of this region.

Indexed as

BacteriophagesChromosome MappingComplementarity Determining RegionsDNA, CircularEscherichia coliEvolution, MolecularGenetic VariationGenome, BacterialGenomic IslandsMolecular Sequence DataPlasmidsRNA, BacterialRNA, Transfer, LeuSalmonella entericaSpecies SpecificityComplementarity Determining RegionsDNA, CircularRNA, BacterialRNA, Transfer, Leu

Identifiers

PMID15774890
PMCPMC1065210
OpenAlexW2038662968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.