Evidence map›Paper›PMID 15765146›Full record

ArticleThe Journal of clinical investigation2005

The DEAD-box RNA helicase Vad1 regulates multiple virulence-associated genes in Cryptococcus neoformans.

John Panepinto, Lide Liu, Jeanie Ramos, Xudong Zhu, Tibor Valyi-Nagy, Saliha Eksi, Jianmin Fu, H Ari Jaffe, Brian Wickes, Peter R Williamson

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
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  7. Characterization of RNA Helicase Genes inInternational journal of molecular sciences · 2025
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  9. Review
  10. Review
  11. Article
  12. Comparative genomics ofbioRxiv : the preprint server for biology · 2024
    Article
  13. Gene Silencing via RNA Interference in Cryptococcus.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  14. Article
  15. Article
  16. Influence of Pathogen Carbon Metabolism on Interactions With Host Immunity.Frontiers in cellular and infection microbiology · 2022
    Review
  17. Epigenetic Regulation of Autophagy in Cardiovascular Pathobiology.International journal of molecular sciences · 2021
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  18. Interaction betweenBiology · 2021
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  19. Article
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

John PanepintoSection of Infectious Diseases, Department of Medicine, University of Illinois at Chicago College of Medicine, Chicago, Illinois 60612, USA. panepijc@uic.edu
Lide Liu
Jeanie Ramos
Xudong Zhu
Tibor Valyi-Nagy
Saliha Eksi
Jianmin Fu
H Ari Jaffe
Brian Wickes
Peter R Williamson
University of Illinois Chicago · USBipar · FRLoyola University Chicago · USThe University of Texas Health Science Center at San Antonio · US

Funding

GENOME ANALYSIS OF CRYPTOCOCCUS NEOFORMANSU01AI048594 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI FRASER-LIGGETT, CLAIRE M · 2001 to 2002
$2.9M
The Role of Unc119 in T Cell Antigen Receptor Signaling1R01AI045995 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI COOK, JAMES LOWELL · 1999 to 2009
$2.6M
Virulence Factor Trafficking in CryptococcusR01AI049371 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI WILLIAMSON, PETER RICHARD · 2002 to 2005
$1.2M
NOT1 in stress tolerance of Cryptococcus neoformansF32AI062124 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI PANEPINTO, JOHN C · 2004 to 2005
$97k
NIAID NIH HHS 1F32AI062124-01NIAID NIH HHS 1UO1 AI48594-01NIAID NIH HHS AI45995NIAID NIH HHS AI 49371NIAID NIH HHS F32 AI062124NIAID NIH HHS R01 AI045995NIAID NIH HHS R01 AI049371
6 · The paper itself

Abstract

The study of fungal regulatory networks is essential to the understanding of how these pathogens respond to host environmental signals with effective virulence-associated traits. In this study, a virulence-associated DEAD-box RNA helicase-encoding gene (VAD1) was isolated from a mutant defective in the virulence factor laccase. A Deltavad1 mutant exhibited a profound reduction in virulence in a mouse model that was restored after reconstitution with WT VAD1. Loss of VAD1 resulted in upregulation of NOT1, a gene encoding a global repressor of transcription. NOT1 was found to act as an intermediary transcriptional repressor of laccase. Vad1 was located within macromolecular complexes that formed cytoplasmic granular bodies in mature cells and during infection of mouse brain. In addition, VAD1 was shown by in situ hybridization to be expressed in the brain of an AIDS patient coinfected with C. neoformans. To understand the role of VAD1 in virulence, a functional genomics approach was used to identify 3 additional virulence determinants dependent on VAD1: PCK1, TUF1, and MPF3, involved in gluconeogenesis, mitochondrial protein synthesis, and cell wall integrity, respectively. These data show that fungal virulence-associated genes are coordinately regulated and that an analysis of such transcriptomes allows for the identification of important new genes involved in the normal growth and virulence of fungal pathogens.

Indexed as

Amino Acid MotifsAnimalsBrainCryptococcosisCryptococcus neoformansFungal ProteinsGene Expression Regulation, FungalGenes, FungalGenomicsHumansIn Situ HybridizationLaccaseMicePhenotypeRecombinant Fusion ProteinsRNA HelicasesFungal ProteinsLaccaseRecombinant Fusion ProteinsRNA Helicases

Identifiers

PMID15765146
PMCPMC1051994
OpenAlexW2145443134

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.