Evidence map›Paper›PMID 15753320›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Role of structural determinants in folding of the sandwich-like protein Pseudomonas aeruginosa azurin.

Corey J Wilson, Pernilla Wittung-Stafshede

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Mutational Analysis of Protein Folding Transition States: Phi Values.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  2. A Euclidean perspective on the unfolding of azurin: chain motion.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Article
  3. Article
  4. Article
  5. Dynamics and unfolding pathway of chimeric azurin variants: insights from molecular dynamics simulation.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2013
    Article
  6. Article
  7. Article
  8. Article
  9. In vitro unfolding of yeast multicopper oxidase Fet3p variants reveals unique role of each metal site.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  10. Article
  11. Minimizing frustration by folding in an aqueous environment.Archives of biochemistry and biophysics · 2008
    Article
  12. Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  13. Article
  14. Strict rules determine arrangements of strands in sandwich proteins.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  15. A geometric construction determines all permissible strand arrangements of sandwich proteins.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Corey J WilsonDepartment of Biochemistry and Cell Biology, Keck Center for Structural Computational Biology, Rice University, 6100 Main Street, Houston, TX 77251, USA.
Pernilla Wittung-Stafshede

Funding

HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
COFACTOR ROLE IN BETA-SHEET PROTEIN FOLDINGR01GM059663 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI WITTUNG-STAFSHEDE, PERNILLA E · 2001 to 2005
$873k
NIGMS NIH HHS GM059663NIGMS NIH HHS GM08280NIGMS NIH HHS R01 GM059663NIGMS NIH HHS T32 GM008280
6 · The paper itself

Abstract

An invariant substructure that forms two interlocked pairs of neighboring beta-strands occurs in essentially all known sandwich-like proteins. Eight conserved positions in these strands were recently shown to act as structural determinants. To test whether the residues at these invariant positions are conserved for mechanistic (i.e., part of folding nucleus) or energetic (i.e., governing native-state stability) reasons, we characterized the folding behavior of eight point-mutated variants of the sandwich-like protein Pseudomonas aeruginosa apo-azurin. We find a simple relationship among the conserved positions: half of the residues form native-like interactions in the folding transition state, whereas the others do not participate in the folding nucleus but govern high native-state stability. Thus, evolutionary preservation of these specific positions gives both mechanistic and energetic advantages to members of the sandwich-like protein family.

Indexed as

AzurinGuanidineKineticsProtein FoldingProtein Structure, TertiaryPseudomonas aeruginosaAzurinGuanidine

Identifiers

PMID15753320
PMCPMC554837

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.