Evidence map›Paper›PMID 15745997›Full record

ArticleNucleic acids research2005

Enzymatic properties of the Caenorhabditis elegans Dna2 endonuclease/helicase and a species-specific interaction between RPA and Dna2.

Do-Hyung Kim, Kyoung-Hwa Lee, Jeong-Hoon Kim, Gi-Hyuck Ryu, Sung-Ho Bae, Byung-Chul Lee, Kyeong-Yeop Moon, Si-Myung Byun, Hyeon-Sook Koo, Yeon-Soo Seo

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Mechanism of mitotic recombination: insights from C. elegans.Current opinion in genetics & development · 2021
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Dna2 exhibits a unique strand end-dependent helicase function.The Journal of biological chemistry · 2010
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Biochemical analysis of human Dna2.Nucleic acids research · 2006
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Do-Hyung KimNational Creative Research Initiative Center for Cell Cycle Control, Department of Biological Sciences, Korea Advanced Institute of Science and Technology Daejeon 305-701, Korea.
Kyoung-Hwa Lee
Jeong-Hoon Kim
Gi-Hyuck Ryu
Sung-Ho Bae
Byung-Chul Lee
Kyeong-Yeop Moon
Si-Myung Byun
Hyeon-Sook Koo
Yeon-Soo Seo
Creative Research · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In both budding and fission yeasts, a null mutation of the DNA2 gene is lethal. In contrast, a null mutation of Caenorhabditis elegans dna2+ causes a delayed lethality, allowing survival of some mutant C.elegans adults to F2 generation. In order to understand reasons for this difference in requirement of Dna2 between these organisms, we examined the enzymatic properties of the recombinant C.elegans Dna2 (CeDna2) and its interaction with replication-protein A (RPA) from various sources. Like budding yeast Dna2, CeDna2 possesses DNA-dependent ATPase, helicase and endonuclease activities. The specific activities of both ATPase and endonuclease activities of the CeDna2 were considerably higher than the yeast Dna2 (approximately 10- and 20-fold, respectively). CeDna2 endonuclease efficiently degraded a short 5' single-stranded DNA tail (<10 nt) that was hardly cleaved by ScDna2. Both endonuclease and helicase activities of CeDna2 were stimulated by CeRPA, but not by human or yeast RPA, demonstrating a species-specific interaction between Dna2 and RPA. These and other enzymatic properties of CeDna2 described in this paper may shed light on the observation that C.elegans is less stringently dependent on Dna2 for its viability than Saccharomyces cerevisiae. We propose that flaps generated by DNA polymerase delta-mediated displacement DNA synthesis are mostly short in C.elegans eukaryotes, and hence less dependent on Dna2 for viability.

Indexed as

Adenosine TriphosphatasesAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedEndodeoxyribonucleasesRecombinant ProteinsReplication Protein ARNASaccharomyces cerevisiae ProteinsSpecies SpecificityAdenosine TriphosphatasesCaenorhabditis elegans Proteinsdna-2 protein, C elegansDNA2 protein, S cerevisiaeDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedEndodeoxyribonucleasesRecombinant ProteinsReplication Protein ARNASaccharomyces cerevisiae Proteins

Identifiers

PMID15745997
PMCPMC552954
OpenAlexW2048673274

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.