Evidence map›Paper›PMID 15743813›Full record

ArticleMolecular and cellular biology2005

Transcription factor interactions and chromatin modifications associated with p53-mediated, developmental repression of the alpha-fetoprotein gene.

Thi T Nguyen, Kyucheol Cho, Sabrina A Stratton, Michelle Craig Barton

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 61 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Thi T NguyenDepartment of Biochemistry and Molecular Biology, Program in Genes and Development, Graduate School of Biological Sciences, University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd., Houston, TX 77030, USA.
Kyucheol Cho
Sabrina A Stratton
Michelle Craig Barton
The University of Texas MD Anderson Cancer Center · US

Funding

In Vitro Reconstitution of Alpha Fetroprotein RegulationR01GM053683 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BARTON, MICHELLE ANN · 1997 to 2007
$1.6M
RECONSTITUTION OF GENE REGULATION IN LIVER REGENERATIONR01GM060213 · NIGMS · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI BARTON, MICHELLE ANN · 2000 to 2003
$1.0M
NIGMS NIH HHS GM53683NIGMS NIH HHS GM60213NIGMS NIH HHS R01 GM053683NIGMS NIH HHS R01 GM060213
6 · The paper itself

Abstract

We performed chromatin immunoprecipitation (ChIP) analyses of developmentally staged solid tissues isolated from wild-type and p53-null mice to determine specific histone N-terminal modifications, histone-modifying proteins, and transcription factor interactions at the developmental repressor region (-850) and core promoter of the hepatic tumor marker alpha-fetoprotein (AFP) gene. Both repression of AFP during liver development and silencing in the brain, where AFP is never expressed, are associated with dimethylation of histone H3 lysine 9 (DiMetH3K9) and the presence of heterochromatin protein 1 (HP1). These heterochromatic markers remain localized to AFP during developmental repression but spread to the upstream albumin gene during silencing. Developmentally regulated decreases in levels of acetylated H3 (AcH3K9) and H4 (AcH4) and of di- and trimethylated H3K4 (DiMetH3K4 and TriMetH3K4) occur at both the core promoter and distal repressor regions of AFP. Hepatic expression of AFP correlates with FoxA interaction at the repressor region and the binding of RNA polymerase II and TATA-binding protein to the core promoter. p53 acts as a developmental repressor of AFP in the liver by binding to chromatin, excluding FoxA interaction and targeting mSin3A/HDAC1 to the distal repressor region. p53-null mice exhibit developmentally delayed AFP repression, concomitant with acetylation of H3K9, methylation of H3K4, and loss of DiMetH3K9, mSin3A/HDAC1, and HP1 interactions.

Indexed as

Gene Expression Regulation, DevelopmentalAcetylationalpha-FetoproteinsAnimalsCell Line, TumorChromatin ImmunoprecipitationChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNA-Binding ProteinsGene SilencingHepatocyte Nuclear Factor 3-alphaHepatocytesHeterochromatinHistonesLiverMethylationalpha-FetoproteinsChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDNA-Binding ProteinsFoxa1 protein, mouseHepatocyte Nuclear Factor 3-alphaHeterochromatinHistonesNuclear ProteinsRepressor ProteinsTranscription FactorsTumor Suppressor Protein p53

Identifiers

PMID15743813
PMCPMC1061614
OpenAlexW2151792596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.