Evidence map›Paper›PMID 15743809›Full record

ArticleMolecular and cellular biology2005

Genetic and functional interaction of evolutionarily conserved regions of the Prp18 protein and the U5 snRNA.

Dagmar Bacíková, David S Horowitz

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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  8. Review
  9. Exon sequences at the splice junctions affect splicing fidelity and alternative splicing.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Dagmar BacíkováDepartment of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, 4301 Jones Bridge Rd., Bethesda, MD 20814, USA.
David S Horowitz
Uniformed Services University of the Health Sciences · US

Funding

BIOCHEMISTRY OF PREMRNA SPLICING FACTORSR01GM057267 · NIGMS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI HOROWITZ, DAVID S · 1999 to 2004
$737k
NIGMS NIH HHS GM57267NIGMS NIH HHS R01 GM057267
6 · The paper itself

Abstract

Both the Prp18 protein and the U5 snRNA function in the second step of pre-mRNA splicing. We identified suppressors of mutant prp18 alleles in the gene for the U5 snRNA (SNR7). The suppressors' U5 snRNAs have either a U4-to-A or an A8-to-C mutation in the evolutionarily invariant loop 1 of U5. Suppression is specific for prp18 alleles that encode proteins with mutations in a highly conserved region of Prp18 which forms an unstructured loop in crystals of Prp18. The snr7 suppressors partly restored the pre-mRNA splicing activity that was lost in the prp18 mutants. The close functional relationship of Prp18 and U5 is emphasized by the finding that two snr7 alleles, U5A and U6A, are dominant synthetic lethal with prp18 alleles. Our results support the idea that Prp18 and the U5 snRNA act in concert during the second step of pre-mRNA splicing and suggest a model in which the conserved loop of Prp18 acts to stabilize the interaction of loop 1 of the U5 snRNA with the splicing intermediates.

Indexed as

AllelesAmino Acid SequenceConserved SequenceEvolution, MolecularGenes, FungalMolecular Sequence DataNuclear ProteinsNucleic Acid ConformationPoint MutationRibonucleoprotein, U5 Small NuclearRNA, FungalRNA, MessengerRNA, Small NuclearRNA SplicingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNuclear ProteinsPRP18 protein, S cerevisiaeRibonucleoprotein, U5 Small NuclearRNA, FungalRNA, MessengerRNA, Small NuclearSaccharomyces cerevisiae ProteinsU5 small nuclear RNA

Identifiers

PMID15743809
PMCPMC1061626
OpenAlexW2128580933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.