Evidence map›Paper›PMID 15734915›Full record

ArticlePlant physiology2005

Carbohydrate-active enzymes involved in the secondary cell wall biogenesis in hybrid aspen.

Henrik Aspeborg, Jarmo Schrader, Pedro M Coutinho, Mark Stam, Asa Kallas, Soraya Djerbi, Peter Nilsson, Stuart Denman, Bahram Amini, Fredrik Sterky and 6 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
24.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 199 citations in OpenAlex.

  1. Article
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  14. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
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  17. Article
  18. Review
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Henrik AspeborgRoyal Institute of Technology, Department of Biotechnology, AlbaNova University Center, SE-10691 Stockholm, Sweden.
Jarmo Schrader
Pedro M Coutinho
Mark Stam
Asa Kallas
Soraya Djerbi
Peter Nilsson
Stuart Denman
Bahram Amini
Fredrik Sterky
Emma Master
Göran Sandberg
Ewa Mellerowicz
Björn Sundberg
Bernard Henrissat
Tuula T Teeri
AlbaNova · SEKTH Royal Institute of Technology · SEUmeå Plant Science Centre · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wood formation is a fundamental biological process with significant economic interest. While lignin biosynthesis is currently relatively well understood, the pathways leading to the synthesis of the key structural carbohydrates in wood fibers remain obscure. We have used a functional genomics approach to identify enzymes involved in carbohydrate biosynthesis and remodeling during xylem development in the hybrid aspen Populus tremula x tremuloides. Microarrays containing cDNA clones from different tissue-specific libraries were hybridized with probes obtained from narrow tissue sections prepared by cryosectioning of the developing xylem. Bioinformatic analyses using the sensitive tools developed for carbohydrate-active enzymes allowed the identification of 25 xylem-specific glycosyltransferases belonging to the Carbohydrate-Active EnZYme families GT2, GT8, GT14, GT31, GT43, GT47, and GT61 and nine glycosidases (or transglycosidases) belonging to the Carbohydrate-Active EnZYme families GH9, GH10, GH16, GH17, GH19, GH28, GH35, and GH51. While no genes encoding either polysaccharide lyases or carbohydrate esterases were found among the secondary wall-specific genes, one putative O-acetyltransferase was identified. These wood-specific enzyme genes constitute a valuable resource for future development of engineered fibers with improved performance in different applications.

Indexed as

Cell WallExpressed Sequence TagsGene Expression ProfilingGene Expression RegulationGlycoside HydrolasesGlycosyltransferasesMolecular Sequence DataMultigene FamilyPhylogenyPlant ProteinsPopulusWoodGlycoside HydrolasesGlycosyltransferasesPlant Proteins

Identifiers

PMID15734915
PMCPMC1065399
OpenAlexW2159681615

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.