Evidence map›Paper›PMID 15731251›Full record

ArticleJournal of virology2005

3'-Terminal sequence in poliovirus negative-strand templates is the primary cis-acting element required for VPgpUpU-primed positive-strand initiation.

Nidhi Sharma, Brian J O'Donnell, James B Flanegan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Functional advantages of triplication of the 3B coding region of the FMDV genome.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
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  8. Review
  9. Article
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  11. Common and unique features of viral RNA-dependent polymerases.Cellular and molecular life sciences : CMLS · 2014
    Review
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nidhi SharmaDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL 32610-0245, USA.
Brian J O'Donnell
James B Flanegan
University of Florida · US

Funding

MOLECULAR BIOLOGY OF POLIOVIRUS RNA REPLICATIONR01AI015539 · NIAID · UNIVERSITY OF FLORIDA · PI FLANEGAN, JAMES BERT · 1985 to 2010
$3.0M
GENETICS OF PICORNAVIRUS RNA REPLICATIONR01AI032123 · NIAID · UNIVERSITY OF FLORIDA · PI FLANEGAN, JAMES BERT · 1992 to 2006
$1.4M
NIAID NIH HHS AI15539NIAID NIH HHS AI32123NIAID NIH HHS R01 AI015539NIAID NIH HHS R01 AI032123
6 · The paper itself

Abstract

The 5' cloverleaf in poliovirus RNA has a direct role in regulating the stability, translation, and replication of viral RNA. In this study, we investigated the role of stem a in the 5' cloverleaf in regulating the stability and replication of poliovirus RNA in HeLa S10 translation-replication reactions. Our results showed that disrupting the duplex structure of stem a destabilized viral RNA and inhibited efficient negative-strand synthesis. Surprisingly, the duplex structure of stem a was not required for positive-strand synthesis. In contrast, altering the primary sequence at the 5'-terminal end of stem a had little or no effect on negative-strand synthesis but dramatically reduced positive-strand initiation and the formation of infectious virus. The inhibition of positive-strand synthesis observed in these reactions was most likely a consequence of nucleotide alterations in the conserved sequence at the 3' ends of negative-strand RNA templates. Previous studies suggested that VPgpUpU synthesized on the cre(2C) hairpin was required for positive-strand synthesis. Therefore, these results are consistent with a model in which preformed VPgpUpU serves as the primer for positive-strand initiation on the 3'AAUUUUGUC5' sequence at the 3' ends of negative-strand templates. Our results suggest that this sequence is the primary cis-acting element that is required for efficient VPgpUpU-primed positive-strand initiation.

Indexed as

Transcription, GeneticTranscription Initiation SiteVirus ReplicationDNA PrimersHeLa CellsHumansNucleic Acid ConformationOligoribonucleotidesPoliovirusRNA, ViralTemplates, GeneticViral Core ProteinsViral Plaque AssayDNA PrimersOligoribonucleotidesRNA, ViralViral Core ProteinsVPg-pUpU

Identifiers

PMID15731251
PMCPMC1075688
OpenAlexW1997256951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.