Evidence map›Paper›PMID 15725073›Full record

ArticleThe Biochemical journal2005

Gene duplication, gene loss and evolution of expression domains in the vertebrate nuclear receptor NR5A (Ftz-F1) family.

Ming-Wei Kuo, John Postlethwait, Wen-Chih Lee, Show-Wan Lou, Woon-Khiong Chan, Bon-chu Chung

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Direct male development in chromosomally ZZ zebrafish.Frontiers in cell and developmental biology · 2024
    Article
  4. Article
  5. Sex-specific splicing of Z- and W-borneProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  15. Temporal and spatial expression of CCN genes in zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2010
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Zebrafish sex determination and differentiation: involvement of FTZ-F1 genes.Reproductive biology and endocrinology : RB&E · 2005
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ming-Wei KuoInstitute of Molecular Biology, Academia Sinica, 128 Academia Road Section 2, Nankang, Taipei, 115, Taiwan.
John Postlethwait
Wen-Chih Lee
Show-Wan Lou
Woon-Khiong Chan
Bon-chu Chung
Institute of Molecular Biology, Academia Sinica · TWNational Taiwan University · TWNational University of Singapore · SG

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 1987 to 2017
$28.8M
GENOMIC ANALYSIS OF ZEBRAFISH DEVELOPMENTR01RR010715 · NCRR · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN HARVEY · 1995 to 2006
$3.1M
NCRR NIH HHS R01 RR010715NCRR NIH HHS R01RR10715NICHD NIH HHS P01 HD022486NICHD NIH HHS P01HD22486
6 · The paper itself

Abstract

Fushi tarazu factor 1 (Ftz-F1, NR5A) is a zinc-finger transcription factor that belongs to the nuclear receptor superfamily and regulates genes that are involved in sterol and steroid metabolism in gonads, adrenals, liver and other tissues. To understand the evolutionary origins and developmental genetic relationships of the Ftz-F1 genes, we have cloned four homologous Ftz-f1 genes in zebrafish, called ff1a, ff1b, ff1c and ff1d. These four genes have different temporal and spatial expression patterns during development, indicating that they have distinct mechanisms of genetic regulation. Among them, the ff1a expression pattern is similar to mammalian Nr5a2, while the ff1b pattern is similar to that of mammalian Nr5a1. Genetic mapping experiments show that these four ff1 genes are located on chromosome segments conserved between the zebrafish and human genomes, indicating a common ancestral origin. Phylogenetic and conserved synteny analysis show that ff1a is the orthologue of NR5A2, and that ff1b and ff1d genes are co-orthologues of NR5A1 that arose by a gene-duplication event, probably a whole-genome duplication, in the ray-fin lineage, and each gene is located next to an NR6A1 co-orthologue as in humans, showing that the tandem duplication occurred before the divergence of human and zebrafish lineages. ff1c does not have a mammalian counterpart. Thus we have characterized the phylogenetic relationships, expression patterns and chromosomal locations of these Ftz-F1 genes, and have demonstrated their identities as NR5A genes in relation to the orthologous genes in other species.

Indexed as

Evolution, MolecularGene DuplicationAnimalsChromosome MappingCloning, MolecularDNA-Binding ProteinsGene Expression Regulation, DevelopmentalHomeodomain ProteinsHumansModels, GeneticMolecular Sequence DataMultigene FamilyPhylogenyReceptors, Cytoplasmic and NuclearReceptors, NotchRNA, MessengerDNA-Binding ProteinsHomeodomain Proteinsnr5a1a protein, zebrafishnr5a1b protein, zebrafishReceptors, Cytoplasmic and NuclearReceptors, NotchRNA, MessengerSteroidogenic Factor 1Transcription FactorsZebrafish Proteins

Identifiers

PMID15725073
PMCPMC1184535
OpenAlexW2022231781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.