Evidence map›Paper›PMID 15716499›Full record

ArticleGenetics2005

Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.

Adam M Deutschbauer, Daniel F Jaramillo, Michael Proctor, Jochen Kumm, Maureen E Hillenmeyer, Ronald W Davis, Corey Nislow, Guri Giaever

Abstract read
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 296 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
296citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

296 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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236 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Adam M DeutschbauerDepartment of Genetics, Stanford University School of Medicine, California 94305, USA.
Daniel F Jaramillo
Michael Proctor
Jochen Kumm
Maureen E Hillenmeyer
Ronald W Davis
Corey Nislow
Guri Giaever

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haploinsufficiency is defined as a dominant phenotype in diploid organisms that are heterozygous for a loss-of-function allele. Despite its relevance to human disease, neither the extent of haploinsufficiency nor its precise molecular mechanisms are well understood. We used the complete set of Saccharomyces cerevisiae heterozygous deletion strains to survey the genome for haploinsufficiency via fitness profiling in rich (YPD) and minimal media to identify all genes that confer a haploinsufficient growth defect. This assay revealed that approximately 3% of all approximately 5900 genes tested are haploinsufficient for growth in YPD. This class of genes is functionally enriched for metabolic processes carried out by molecular complexes such as the ribosome. Much of the haploinsufficiency in YPD is alleviated by slowing the growth rate of each strain in minimal media, suggesting that certain gene products are rate limiting for growth only in YPD. Overall, our results suggest that the primary mechanism of haploinsufficiency in yeast is due to insufficient protein production. We discuss the relevance of our findings in yeast to human haploinsufficiency disorders.

Indexed as

Gene Expression Regulation, FungalGenetic TechniquesGenome, FungalAllelesCell ProliferationCulture MediaGene DeletionGenes, DominantHeterozygoteModels, GeneticOligonucleotide Array Sequence AnalysisPhenotypeRibosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, DNACulture MediaSaccharomyces cerevisiae Proteins

Identifiers

PMID15716499
PMCPMC1449596

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.