Evidence map›Paper›PMID 15713639›Full record

ArticleMolecular and cellular biology2005

Mutations in the nucleosome core enhance transcriptional silencing.

Eugenia Y Xu, Xin Bi, Michael J Holland, Daniel E Gottschling, James R Broach

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Proliferating cell nuclear antigen (PCNA) contributes to the high-order structure and stability of heterochromatin in Saccharomyces cerevisiae.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Eugenia Y XuDepartment of Molecular Biology, Princeton University, Washington Rd., Princeton, NJ 08544, USA.
Xin Bi
Michael J Holland
Daniel E Gottschling
James R Broach
Princeton University · USFred Hutch Cancer Center · USUniversity of California, Davis · USUniversity of Rochester · US

Funding

DISSECTION OF TELOMERE ATTRIBUTES IN S. CEREVISIAER01GM043893 · NIGMS · UNIVERSITY OF CHICAGO · PI GOTTSCHLING, DANIEL E. · 1991 to 2009
$4.5M
KTC: AN ACCURATE METHOD FOR TRANSCRIPTOME ANALYSISR01HG001736 · NHGRI · UNIVERSITY OF CALIFORNIA DAVIS · PI HOLLAND, MICHAEL J · 1997 to 2002
$1.1M
NHGRI NIH HHS HG1736NIGMS NIH HHS GM43893NIGMS NIH HHS GM45840NIGMS NIH HHS R01 GM043893
6 · The paper itself

Abstract

Transcriptional silencing in Saccharomyces requires specific nucleosome modifications promoted in part by a complex of Sir proteins that binds to the modified nucleosomes. Recent evidence suggests that modifications of both the histone amino termini and the core domain of nucleosomes contribute to silencing. We previously identified histone H4 mutations affecting residues in the core of the nucleosome that yield enhanced silencing at telomeres. Here we show that enhanced silencing induced by these mutations increases the proportion of cells in which telomeres and silent mating-type loci are in the silent state. One H4 mutation affects the expression of a subset of genes whose expression is altered by deletion of HTZ1, which encodes the histone variant H2A.Z, suggesting that the mutation may antagonize H2A.Z incorporation into nucleosomes. A second mutation causes the spread of silencing into subtelomeric regions that are not normally silenced in wild-type cells. Mechanistically, this mutation does not significantly accelerate the formation of silent chromatin but, rather, reduces the rate of decay of the silenced state. We propose that these mutations use distinct mechanisms to affect the dynamic interplay between activation and repression at the boundary between active and silent chromatin.

Indexed as

Gene SilencingAllelesGene Expression Regulation, FungalGenes, FungalGenes, Mating Type, FungalHistonesMolecular ConformationMutationNucleosomesRNA, MessengerSaccharomyces cerevisiaeSilent Information Regulator Proteins, Saccharomyces cerevisiaeTelomereTranscription, GeneticHistonesNucleosomesRNA, MessengerSilent Information Regulator Proteins, Saccharomyces cerevisiae

Identifiers

PMID15713639
PMCPMC549373
OpenAlexW2107168601

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.