Evidence map›Paper›PMID 15710043›Full record

ArticleBMC developmental biology2005

Sea urchin vault structure, composition, and differential localization during development.

Phoebe L Stewart, Miriam Makabi, Jennifer Lang, Carrie Dickey-Sims, Anthony J Robertson, James A Coffman, Kathy A Suprenant

Open access · hybridAbstract readComparative Study
In one paragraph

Article in BMC developmental biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Phoebe L StewartDepartment of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN, USA. phoebe.stewart@vanderbilt.edu
Miriam Makabi
Jennifer Lang
Carrie Dickey-Sims
Anthony J Robertson
James A Coffman
Kathy A Suprenant
Stowers Institute for Medical Research · USUniversity of Kansas · USInstitute for Molecular Medicine · USVanderbilt University Medical Center · US

Funding

WEIGHT CONTROL, CELL SIGNALING AND CANCER PREVENTIONP20RR015563 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI ZUFFEREY, RACHEL · 2000 to 2009
$20.1M
NCRR NIH HHS 1P20RR15563NCRR NIH HHS P20 RR015563
6 · The paper itself

Abstract

backgroundVaults are intriguing ribonucleoprotein assemblies with an unknown function that are conserved among higher eukaryotes. The Pacific coast sea urchin, Strongylocentrotus purpuratus, is an invertebrate model organism that is evolutionarily closer to humans than Drosophila and C. elegans, neither of which possesses vaults. Here we compare the structures of sea urchin and mammalian vaults and analyze the subcellular distribution of vaults during sea urchin embryogenesis.

resultsThe sequence of the sea urchin major vault protein (MVP) was assembled from expressed sequence tags and genome traces, and the predicted protein was found to have 64% identity and 81% similarity to rat MVP. Sea urchin MVP includes seven approximately 50 residue repeats in the N-terminal half of the protein and a predicted coiled coil domain in the C-terminus, as does rat MVP. A cryoelectron microscopy (cryoEM) reconstruction of isolated sea urchin vaults reveals the assembly to have a barrel-shaped external structure that is nearly identical to the rat vault structure. Analysis of the molecular composition of the sea urchin vault indicates that it contains components that may be homologs of the mammalian vault RNA component (vRNA) and protein components (VPARP and TEP1). The sea urchin vault appears to have additional protein components in the molecular weight range of 14-55 kDa that might correspond to molecular contents. Confocal experiments indicate a dramatic relocalization of MVP from the cytoplasm to the nucleus during sea urchin embryogenesis.

conclusionsThese results are suggestive of a role for the vault in delivering macromolecules to the nucleus during development.

Indexed as

Amino Acid SequenceAnimalsBlotting, WesternCell NucleusCryoelectron MicroscopyCytoplasmElectrophoresis, Polyacrylamide GelEmbryonic DevelopmentFemaleMajor Vault ProteinMaleMicroscopy, ConfocalMolecular Sequence DataNucleocytoplasmic Transport ProteinsProtein Structure, TertiaryRatsMajor Vault ProteinNucleocytoplasmic Transport ProteinsVault Ribonucleoprotein Particles

Identifiers

PMID15710043
PMCPMC550661
OpenAlexW2137048039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.