Evidence map›Paper›PMID 15707504›Full record

ArticleBMC infectious diseases2005

Detection of virulence genes in Malaysian Shigella species by multiplex PCR assay.

Kwai Lin Thong, Susan Ling Ling Hoe, S D Puthucheary, Rohani Md Yasin

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 86 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. ESBL ProducingFrontiers in public health · 2021
    Article
  9. Article
  10. Virulence-Related Gene Distribution AmongInfection and drug resistance · 2020
    Article
  11. Evaluation of LAMP for detection ofAccess microbiology · 2020
    Article
  12. Extended-Spectrum Beta-Lactamase-ProducingFrontiers in public health · 2020
    Article
  13. Virulence gene profiles ofPathogens and global health · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Occurrence of genes encoding enterotoxins in uropathogenic Escherichia coli isolates.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2015
    Article
  18. Clinical and microbiological profiles of shigellosis in children.Journal of health, population, and nutrition · 2014
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kwai Lin ThongInstitute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur, Malaysia. thongkl@um.edu.my
Susan Ling Ling Hoe
S D Puthucheary
Rohani Md Yasin
University of Malaya · MYInstitute for Medical Research · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn Malaysia, Shigella spp. was reported to be the third commonest bacterial agent responsible for childhood diarrhoea. Currently, isolation of the bacterium and confirmation of the disease by microbiological and biochemical methods remain as the "gold standard". This study aimed to detect the prevalence of four Shigella virulence genes present concurrently, in randomly selected Malaysian strains via a rapid multiplex PCR (mPCR) assay.

methodsA mPCR assay was designed for the simultaneous detection of chromosomal- and plasmid-encoded virulence genes (set1A, set1B, ial and ipaH) in Shigella spp. One hundred and ten Malaysian strains (1997-2000) isolated from patients from various government hospitals were used. Reproducibility and sensitivity of the assay were also evaluated. Applicability of the mPCR in clinical settings was tested with spiked faeces following preincubation in brain heart infusion (BHI) broth.

resultsThe ipaH sequence was present in all the strains, while each of the set1A, set1B and ial gene was present in 40% of the strains tested. Reproducibility of the mPCR assay was 100% and none of the non-Shigella pathogens tested in this study were amplified. The mPCR could detect 100 colony-forming units (cfu) of shigellae per reaction mixture in spiked faeces following preincubation.

conclusionsThe mPCR system is reproducible, sensitive and is able to identify pathogenic strains of shigellae irrespective of the locality of the virulence genes. It can be easily performed with a high throughput to give a presumptive identification of the causal pathogen.

Indexed as

Antigens, BacterialBacterial ProteinsDNA PrimersDysentery, BacillaryElectrophoresis, Agar GelFecesGene FrequencyHumansPolymerase Chain ReactionReproducibility of ResultsSensitivity and SpecificityShigellaVirulence FactorsAntigens, BacterialBacterial ProteinsDNA PrimersipaH protein, Shigella flexneriVirulence Factors

Identifiers

PMID15707504
PMCPMC551607
OpenAlexW1518264471

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.