Evidence map›Paper›PMID 15705059›Full record

ArticleThe Biochemical journal2005

In vivo DNase I-mediated footprinting analysis along the human bradykinin B1 receptor (BDKRB1) gene promoter: evidence for cell-specific regulation.

Martin Angers, Régen Drouin, Magdalena Bachvarova, Isabelle Paradis, Brad Bissell, Makoto Hiromura, Anny Usheva, Dimcho Bachvarov

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Martin AngersUnité de Recherche en Génétique Humaine et Moléculaire, Research Centre, Hôpital St-François d'Assise, Centre Hospitalier Universitaire de Québec, 10 de l'Espinay Street, QC, G1L 3L5, Canada.
Régen Drouin
Magdalena Bachvarova
Isabelle Paradis
Brad Bissell
Makoto Hiromura
Anny Usheva
Dimcho Bachvarov
Université Laval · CACentre hospitalier universitaire de Québec · CAHôpital Saint-François d'Assise · CAHôtel-Dieu de Québec · CA

Funding

YY1 FUNCTIONS IN VASCULAR SMOOTH MUSCLE CELLSR01HL062458 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI USHEVA-SIMIDJIYSKA, ANNY · 2000 to 2008
$2.6M
NHLBI NIH HHS HL62458NHLBI NIH HHS R01 HL062458
6 · The paper itself

Abstract

By applying in vivo dimethyl sulphate and UV light type C-footprinting analysis, we previously showed that specific DNA sequences in the -1349/+42 core promoter region of the inducible human BDKRB1 (bradykinin B1 receptor) gene correlated with its transcriptional activity. In the present study we used the highly sensitive DNase I in vivo footprinting approach to delineate more precisely the functional domains of the BDKRB1 gene promoter in human SMCs (smooth muscle cells). Human lymphocytes that do not express a functional BDKRB1 were also studied as a reference using dimethyl sulphate, UV light type C and DNase I treatments. An obvious difference was found in the DNase I-footprinting patterns between cellular systems that express a functional BDKRB1 (SMCs) in comparison with human lymphocytes, where randomly distributed nucleosome-like footprinting patterns were found in the bulk of the core promoter region studied. Gel-shift assays and expression studies pointed to the implication of the YY1 and a TBP/TFIIB (TATA-box-binding protein/transcription factor IIB) transcription factor in the regulation of BDKRB1 gene expression in SMCs and possible YY1 involvement in the mechanisms of nuclear factor kappaB-mediated regulation of the receptor expression. No significant changes in the promoter foot-printing pattern were found after treatment with interleukin-1beta or serum (known BDKRB1 gene inducers), indicating that definite regulatory motifs could exist outside the BDKRB1 gene core promoter region studied.

Indexed as

DNA FootprintingBase SequenceCells, CulturedDeoxyribonuclease IElectrophoretic Mobility Shift AssayGene Expression RegulationHumansInterleukin-1LymphocytesMolecular Sequence DataMuscle, Smooth, VascularMyocytes, Smooth MuscleNucleosomesOrgan SpecificityPromoter Regions, GeneticReceptor, Bradykinin B1Deoxyribonuclease IInterleukin-1NucleosomesReceptor, Bradykinin B1Transcription Factor TFIIBYY1 protein, humanYY1 Transcription Factor

Identifiers

PMID15705059
PMCPMC1184537
OpenAlexW2065850980

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.