ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005
Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed.
- Association of a 7.9 kb Endogenous Retrovirus Insertion in Intron 1 of CD36 with Obesity and Fat Measurements in Sheep.Mobile DNA · 2025Article
- Development of SSR Markers Linked to Stress Responsive Genes along Tomato Chromosome 3 (Biotech (Basel (Switzerland)) · 2022Article
- Coordinated transcriptional regulation of the carotenoid biosynthesis contributes to fruit lycopene content in high-lycopene tomato genotypes.Horticulture research · 2022Article
- Full-length LTR retroelements in Capsicum annuum revealed a few species-specific family bursts with insertional preferences.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021Article
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- Amplified Fragment Length Polymorphism: Applications and Recent Developments.Methods in molecular biology (Clifton, N.J.) · 2021Review
- Comparative phylogeography of mainland and insular species of Neotropical molossid bats (Ecology and evolution · 2020Article
- Agrobacterium-mediated Tnt1 mutagenesis of moss protonemal filaments and generation of stable mutants with impaired gametophyte.Molecular genetics and genomics : MGG · 2019Article
- Genetic variation among Saudi tomato (Saudi journal of biological sciences · 2018Article
- Comparison of traditional and new generation DNA markers declares high genetic diversity and differentiated population structure of wild almond species.Scientific reports · 2017Article
- Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions.BMC genomics · 2016Article
- Useful parasites: the evolutionary biology and biotechnology applications of transposable elements.Journal of genetics · 2016Review
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- A Deluge of Complex Repeats: The Solanum Genome.PloS one · 2015Article
- Assessment of genetic variation in Bulgarian tomato (Biotechnology, biotechnological equipment · 2014Article
- A simple and efficient method to isolate LTR sequences of plant retrotransposon.BioMed research international · 2014Article
- Advances in plant gene-targeted and functional markers: a review.Plant methods · 2013Article
- Plant domestication and resistance to herbivory.International journal of plant genomics · 2013Article
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Authors and funding
6 authors.
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Abstract
The retrotransposon-based sequence-specific amplification polymorphism (SSAP) marker system was used to assess the genetic diversities of collections of tomato and pepper industrial lines. The utility of SSAP markers was compared to that of amplified fragment length polymorphism (AFLP) and simple sequence repeat (SSR) markers. On the basis of our results, SSAP is most informative of the three systems for studying genetic diversity in tomato and pepper, with a significant correlation of genetic relationships between different SSAP datasets and between SSAP, AFLP and SSR markers. SSAP showed about four- to ninefold more diversity than AFLP and had the highest number of polymorphic bands per assay ratio and the highest marker index. For tomato, SSAP is more suitable for inferring overall genetic variation and relationships, while SSR has the ability to detect specific genetic relationships. All three marker results for pepper showed general agreement with pepper types. Additionally, retrotransposon sequences isolated from one species can be used in related Solanaceae genera. These results suggest that different marker systems are suited for studying genetic diversity in different contexts depending on the group studied, where discordance between different marker systems can be very informative for understanding genetic relationships within the study group.
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