Evidence map›Paper›PMID 15699324›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Artemis-independent functions of DNA-dependent protein kinase in Ig heavy chain class switch recombination and development.

Sean Rooney, Frederick W Alt, JoAnn Sekiguchi, John P Manis

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Phosphorylation of DNA-PKcs at the S2056 cluster ensures efficient and productive lymphocyte development in XLF-deficient mice.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. The Role of DNA Repair in Genomic Instability of Multiple Myeloma.International journal of molecular sciences · 2022
    Review
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. The MRE11 complex: starting from the ends.Nature reviews. Molecular cell biology · 2011
    Review
  13. Article
  14. Non-homologous end joining in class switch recombination: the beginning of the end.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Fixing DNA breaks during class switch recombination.The Journal of experimental medicine · 2008
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sean RooneyHoward Hughes Medical Institute, Children's Hospital, CBR Institute for Biomedical Research, and Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Frederick W Alt
JoAnn Sekiguchi
John P Manis
Howard Hughes Medical Institute · US

Funding

TRANSGENIC MODELS OF T CELL RECEPTOR IMMUNODEFICIENCIESP01AI035714 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 1994 to 2007
$9.3M
Transcriptional Regulation of the Allergic ResponseP01AI031541 · NIAID · CHILDREN'S HOSPITAL BOSTON · PI GEHA, RAIF SALIM · 1999 to 2007
$8.0M
MOLECULAR BASIS OF IMMUNE FUNCTION IN HEALTH AND DISEASEU01AI031541 · NIAID · CHILDREN'S HOSPITAL BOSTON · PI GEHA, RAIF SALIM · 1991 to 1994
–
MOLECULAR BASIS OF IMMUNE FUNCTION IN HEALTH AND DISEASEU19AI031541 · NIAID · CHILDREN'S HOSPITAL BOSTON · PI MITCHELL, LESTER · 1995 to 1998
–
NIAID NIH HHS AI31541NIAID NIH HHS AI35714NIAID NIH HHS P01 AI031541NIAID NIH HHS P01 AI035714NIAID NIH HHS U19 AI031541
6 · The paper itself

Abstract

Assembly of Ig genes in B lineage cells involves two distinct DNA rearrangements. In early B cell development, site-specific double strand breaks (DSBs) at germ-line V, D, and J gene segments are joined via nonhomologous end-joining (NHEJ) to form variable region exons. Activated mature B cells can change expressed Ig heavy chain constant region exons by class switch recombination (CSR), which also involves DSB intermediates. Absence of any known NHEJ factor severely impairs joining of cleaved V, D, and J segments. In NHEJ, DNA-dependent protein kinase (DNA-PK), which is comprised of the Ku70/80 end-binding heterodimer and the catalytic subunit (DNA-PKcs), activates Artemis to generate a nuclease that processes DSBs before ligation. Because inactivation of DNA-PKcs components also severely affects CSR, we tested whether DNA-PK also functions in CSR via activation of Artemis. To obviate the requirement for V(D)J recombination, we generated DNA-PKcs- and Artemis-deficient B cells that harbored preassembled Ig heavy chain and kappa-light chain "knock-in" (HL) alleles. We found that Artemis-deficient HL B cells undergo robust CSR, indicating that DNA-PKcs functions in CSR via an Artemis-independent mechanism. To further elucidate potential Artemis-independent functions of DNA-PKcs, we asked whether the embryonic lethality associated with double-deficiency for DNA-PKcs and the related ataxia-telangiectasia-mutated (ATM) kinase was also observed in mice doubly deficient for ATM and Artemis. We found that ATM/Artemis double-deficient mice were viable and born in normal Mendelian numbers. Therefore, we conclude that DNA-PKcs has Artemis-independent functions in CSR and normal development.

Indexed as

Immunoglobulin Class SwitchingRecombination, GeneticAllelesAnimalsAtaxia Telangiectasia Mutated ProteinsB-LymphocytesCell Cycle ProteinsCell DifferentiationDNA-Activated Protein KinaseDNA-Binding ProteinsEndonucleasesImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsImmunoglobulin Switch RegionMiceMice, KnockoutAtaxia Telangiectasia Mutated ProteinsAtm protein, mouseCell Cycle ProteinsDclre1c protein, mouseDNA-Activated Protein KinaseDNA-Binding ProteinsEndonucleasesImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsNuclear ProteinsProtein Serine-Threonine KinasesTumor Suppressor Proteins

Identifiers

PMID15699324
PMCPMC548986
OpenAlexW2077342759

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.