Evidence map›Paper›PMID 15695695›Full record

ArticleJournal of clinical microbiology2005

Novel replicon-based reporter gene assay for detection of rubella virus in clinical specimens.

Wen-Pin Tzeng, Yumei Zhou, Joseph Icenogle, Teryl K Frey

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Cell Cultures for Virology: Usability, Advantages, and Prospects.International journal of molecular sciences · 2020
    Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Wen-Pin TzengDepartment of Biology, Georgia State University, 24 Peachtree Center Ave., Atlanta, GA 30303, USA.
Yumei Zhou
Joseph Icenogle
Teryl K Frey
Georgia State University · USNational Center for Infectious Diseases · US

Funding

MOLECULAR BIOLOGY OF RUBELLA VIRUSR01AI021389 · NIAID · GEORGIA STATE UNIVERSITY · PI FREY, TERYL K · 1987 to 2006
$1.7M
MOLECULAR BIOLOGY OF RUBELLA VIRUSR23AI021389 · NIAID · GEORGIA STATE UNIVERSITY · PI FREY, TERYL K · 1985 to 1986
–
NIAID NIH HHS AI21389NIAID NIH HHS R01 AI021389
6 · The paper itself

Abstract

Proof of concept for a novel diagnostic assay for rubella virus (RUB) based on RUB replicons expressing reporter genes was demonstrated. RUB replicons have the structural protein coding region replaced with a reporter gene such as green fluorescent protein or chloramphenicol acetyltransferase. Previously, it was shown that a replicon construct with a specific in-frame deletion in the nonstructural protein coding region (NotI, approximately nucleotides 1500 to 2100 of the genome) failed to replicate and express the reporter gene unless rescued by a coinfecting wild-type helper RUB (W.-P. Tzeng et al., Virology 289:63-73, 2001). In the present study, it was found that rescue of reporter gene expression by NotI replicons occurred when coinfection was done with clinical specimens containing RUB, indicating that this system could be the basis for a diagnostic assay. The assay was sensitive, using laboratory RUB strains and as low a dose as one plaque-forming unit. The assay was specific in that it was positive for RUB strains of both genotypes and was negative for a panel of human viruses. It was also possible to genetically sequence the RUB present in positive clinical specimens detected in the assay for genotypic strain determination.

Indexed as

Genes, ReporterAnimalsChloramphenicol O-AcetyltransferaseChlorocebus aethiopsDeoxyribonucleases, Type II Site-SpecificGene DeletionGreen Fluorescent ProteinsHumansRepliconRubellaRubella virusVero CellsChloramphenicol O-AcetyltransferaseDeoxyribonucleases, Type II Site-SpecificGCGGCCGC-specific type II deoxyribonucleasesGreen Fluorescent Proteins

Identifiers

PMID15695695
PMCPMC548122
OpenAlexW2151493763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.