Evidence map›Paper›PMID 15692568›Full record

ArticleThe EMBO journal2005

Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins.

Dipayan Rudra, Yu Zhao, Jonathan R Warner

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 176 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
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  8. Article
  9. Review
  10. The homeostatic regulation of ribosome biogenesis.Seminars in cell & developmental biology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Yeast Crf1p: An activator in need is an activator indeed.Computational and structural biotechnology journal · 2022
    Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dipayan RudraDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Yu Zhao
Jonathan R Warner
Albert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
RIBOSOMAL PROTEIN GENES OF SACCHAROMYCES CEREVISIAER01GM025532 · NIGMS · YESHIVA UNIVERSITY · PI WARNER, JONATHAN R. · 1985 to 2010
$6.2M
NCI NIH HHS CA-13330NIGMS NIH HHS GM-25532NIGMS NIH HHS R01 GM025532
6 · The paper itself

Abstract

The 138 genes encoding the 79 ribosomal proteins (RPs) of Saccharomyces cerevisiae form the tightest cluster of coordinately regulated genes in nearly all transcriptome experiments. The basis for this observation remains unknown. We now provide evidence that two factors, Fhl1p and Ifh1p, are key players in the transcription of RP genes. Both are found at transcribing RP genes in vivo. Ifh1p, but not Fhl1p, leaves the RP genes when transcription is repressed. The occupancy of the RP genes by Ifh1p depends on its interaction with the phospho-peptide recognizing forkhead-associated domain of Fhl1p. Disruption of this interaction is severely deleterious to ribosome synthesis and cell growth. Loss of functional Fhl1p leads to cells that have only 20% the normal amount of RNA and that synthesize ribosomes at only 5-10% the normal rate. Homeostatic mechanisms within the cell respond by reducing the transcription of rRNA to match the output of RPs, and by reducing the global transcription of mRNA to match the capacity of the translational apparatus.

Indexed as

Cell DivisionDNA, FungalForkhead Transcription FactorsGenes, FungalMutagenesis, Site-DirectedOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticProtein BindingProtein Structure, TertiaryRecombinant ProteinsRibosomal ProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsDNA, FungalFHL1 protein, S cerevisiaeForkhead Transcription FactorsIFH1 protein, S cerevisiaeRecombinant ProteinsRibosomal ProteinsRNA, FungalRNA, MessengerSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID15692568
PMCPMC548658
OpenAlexW2044346282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.