Evidence map›Paper›PMID 15692559›Full record

ArticleThe EMBO journal2005

The transcriptional coactivator PC4/Sub1 has multiple functions in RNA polymerase II transcription.

Olga Calvo, James L Manley

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
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  17. Glycolytic flux inThe Biochemical journal · 2019
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  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Olga CalvoDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
James L Manley
Columbia University · USUniversidad de Salamanca · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription and processing of mRNA precursors are coordinated events that require numerous complex interactions to ensure that they are successfully executed. We described previously an unexpected association between a transcription factor, PC4 (or Sub1 in yeast), and an mRNA polyadenylation factor, CstF-64 (Rna15 in yeast), and provided evidence that this was important for efficient transcription elongation. Here we provide insight into the mechanism by which this occurs. We show that Sub1 and Rna15 are recruited to promoters and present along the length of several yeast genes. Allele-specific genetic interactions between SUB1 and genes encoding an RNA polymerase II (RNAP II)-specific kinase (KIN28) and phosphatase (FCP1) suggest that Sub1 influences and/or is sensitive to the phosphorylation status of elongating RNAP II. Remarkably, we find that cells lacking Sub1 display decreased accumulation of Fcp1, altered RNAP II phosphorylation and decreased crosslinking of RNAP II to transcribed genes. Our data provide evidence that Rna15 and Sub1 are present along the length of several genes and that Sub1 facilitates elongation by influencing enzymes that modify RNAP II.

Indexed as

ChromatinCyclin-Dependent KinasesDNA-Binding ProteinsGene DeletionGenes, FungalmRNA Cleavage and Polyadenylation FactorsPhosphoprotein PhosphatasesPhosphorylationPromoter Regions, GeneticRepressor ProteinsRNA, FungalRNA, MessengerRNA Polymerase IIRNA Processing, Post-TranscriptionalSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinscarboxy-terminal domain phosphataseChromatinCyclin-Dependent KinasesDNA-Binding ProteinsKin28 protein kinase, S cerevisiaemRNA Cleavage and Polyadenylation FactorsPhosphoprotein PhosphatasesRepressor ProteinsRNA15 protein, S cerevisiaeRNA, FungalRNA, MessengerRNA Polymerase IISaccharomyces cerevisiae ProteinsSUB1 protein, S cerevisiaeTrans-ActivatorsTranscription Factors

Identifiers

PMID15692559
PMCPMC554125
OpenAlexW2073350644

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.