ArticleApplied and environmental microbiology2005
Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB).
Article in Applied and environmental microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Microscopic Methods for Identification of Sulfate-Reducing Bacteria from Various Habitats.International journal of molecular sciences · 2021Review
- Methodological Aspects of Multiplex Terminal Restriction Fragment Length Polymorphism-Technique to Describe the Genetic Diversity of Soil Bacteria, Archaea and Fungi.Sensors (Basel, Switzerland) · 2020Article
- MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle.GigaScience · 2017Article
- Biogeography and Adaptive evolution of Streptomyces Strains from saline environments.Scientific reports · 2016Article
- Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river.Scientific reports · 2015Article
- Biogeography of Nocardiopsis strains from hypersaline environments of Yunnan and Xinjiang Provinces, western China.Scientific reports · 2015Article
- Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.Applied and environmental microbiology · 2015Article
- Discrimination among individuals using terminal restriction fragment length polymorphism profiling of bacteria derived from forensic evidence.International journal of legal medicine · 2015Article
- Anthropogenic impact on diazotrophic diversity in the mangrove rhizosphere revealed by nifH pyrosequencing.Frontiers in microbiology · 2015Article
- Application of denaturing high-performance liquid chromatography for monitoring sulfate-reducing bacteria in oil fields.Applied and environmental microbiology · 2013Article
- Abundance, diversity and activity of sulfate-reducing prokaryotes in heavy metal-contaminated sediment from a salt marsh in the Medway Estuary (UK).Marine biotechnology (New York, N.Y.) · 2012Article
- Molecular analysis of the metabolic rates of discrete subsurface populations of sulfate reducers.Applied and environmental microbiology · 2011Article
- Microorganisms with novel dissimilatory (bi)sulfite reductase genes are widespread and part of the core microbiota in low-sulfate peatlands.Applied and environmental microbiology · 2011Article
- Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria.Applied and environmental microbiology · 2010Article
- Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage.Applied and environmental microbiology · 2010Article
- Nested PCR and new primers for analysis of sulfate-reducing bacteria in low-cell-biomass environments.Applied and environmental microbiology · 2010Article
- Microbial community response to a simulated hydrocarbon spill in mangrove sediments.Journal of microbiology (Seoul, Korea) · 2010Article
- Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.Microbial ecology · 2008Article
- Sulfate assimilation in eukaryotes: fusions, relocations and lateral transfers.BMC evolutionary biology · 2008Article
- Application of methods for identifying broiler chicken gut bacterial species linked with increased energy metabolism.Applied and environmental microbiology · 2008Article
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2 authors.
Funding
Abstract
Sediment samples were collected worldwide from 16 locations on four continents (in New York, California, New Jersey, Virginia, Puerto Rico, Venezuela, Italy, Latvia, and South Korea) to assess the extent of the diversity and the distribution patterns of sulfate-reducing bacteria (SRB) in contaminated sediments. The SRB communities were examined by terminal restriction fragment (TRF) length polymorphism (TRFLP) analysis of the dissimilatory sulfite reductase genes (dsrAB) with NdeII digests. The fingerprints of dsrAB genes contained a total of 369 fluorescent TRFs, of which <20% were present in the GenBank database. The global sulfidogenic communities appeared to be significantly different among the anthropogenically impacted (petroleum-contaminated) sites, but nearly all were less diverse than pristine habitats, such as mangroves. A global SRB indicator species of petroleum pollution was not identified. However, several dsrAB gene sequences corresponding to hydrocarbon-degrading isolates or consortium members were detected in geographically widely separated polluted sites. Finally, a cluster analysis of the TRFLP fingerprints indicated that many SRB microbial communities were most similar on the basis of close geographic proximity (tens of kilometers). Yet, on larger scales (hundreds to thousands of kilometers) SRB communities could cluster with geographically widely separated sites and not necessarily with the site with the closest proximity. These data demonstrate that SRB populations do not adhere to a biogeographic distribution pattern similar to that of larger eukaryotic organisms, with the greatest species diversity radiating from the Indo-Pacific region. Rather, a patchy SRB distribution is encountered, implying an initially uniform SRB community that has differentiated over time.
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