Evidence map›Paper›PMID 15689515›Full record

ArticleProtein science : a publication of the Protein Society2005

All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin.

Lu Deng, Eugene S Vysotski, Svetlana V Markova, Zhi-Jie Liu, John Lee, John Rose, Bi-Cheng Wang

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
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  4. In vitro CBArchives of toxicology · 2025
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  6. Design of Ctenophore CaLife (Basel, Switzerland) · 2024
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  9. Crystal structure of semisynthetic obelin-v.Protein science : a publication of the Protein Society · 2022
    Article
  10. The X-ray structure of juvenile hormone diol kinase from the silkworm Bombyx mori.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  11. Article
  12. Unusual shift in the visible absorption spectrum of an active ctenophore photoprotein elucidated by time-dependent density functional theory.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Article
  13. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Lu DengDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.
Eugene S Vysotski
Svetlana V Markova
Zhi-Jie Liu
John Lee
John Rose
Bi-Cheng Wang
University of Georgia · USInstitute of Biophysics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The crystal structures of calcium-loaded apo-aequorin and apo-obelin have been determined at resolutions 1.7A and 2.2 A, respectively. A calcium ion is observed in each of the three EF-hand loops that have the canonical calcium-binding sequence, and each is coordinated in the characteristic pentagonal bipyramidal configuration. The calcium-loaded apo-protein retain the same compact scaffold and overall fold as the unreacted photoproteins containing the bound substrate, 2-hyroperoxycoelenterazine, and also the same as the Ca2+-discharged obelin bound with product, coleneteramide. Nevertheless, there are easily discerned shifts in both helix and loop regions, and the shifts are not the same between the two proteins. It is suggested that these photoproteins to sense Ca2+ concentration transients and to produce their bioluminescence response on the millisecond timescale. A mechanism of intrastructural transmission of the calcium signal is proposed.

Indexed as

AequorinAmino Acid MotifsCalciumLuminescent ProteinsProtein Structure, SecondaryProtein Structure, TertiaryAequorinCalciumLuminescent Proteinsobelin

Identifiers

PMID15689515
PMCPMC2279293
OpenAlexW2090870404

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.