ArticleGenome research2005
Mapping segmental and sequence variations among laboratory mice using BAC array CGH.
Article in Genome research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
32 citing papers in PubMed.
- Finding invisible quantitative trait loci with missing data.Plant biotechnology journal · 2018Article
- Genome Wide Distributions and Functional Characterization of Copy Number Variations between Chinese and Western Pigs.PloS one · 2015Article
- Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array.BMC genomics · 2014Article
- Massive screening of copy number population-scale variation in Bos taurus genome.BMC genomics · 2013Article
- Comparison of whole genome amplification methods for analysis of DNA extracted from microdissected early breast lesions in formalin-fixed paraffin-embedded tissue.ISRN oncology · 2012Article
- Cooperativity of Rb, Brca1, and p53 in malignant breast cancer evolution.PLoS genetics · 2012Article
- Online resources for genomic structural variation.Methods in molecular biology (Clifton, N.J.) · 2012Article
- Network analysis of skin tumor progression identifies a rewired genetic architecture affecting inflammation and tumor susceptibility.Genome biology · 2011Article
- Copy-number variation: the balance between gene dosage and expression in Drosophila melanogaster.Genome biology and evolution · 2011Article
- Article
- Loss of Blm enhances basal cell carcinoma and rhabdomyosarcoma tumorigenesis in Ptch1+/- mice.Carcinogenesis · 2010Article
- Copy number variation in the bovine genome.BMC genomics · 2010Article
- Analysis of copy number variations among diverse cattle breeds.Genome research · 2010Article
- A quantitative trait locus responsible for inducing B-cell lymphoblastic lymphoma is a hotspot for microsatellite instability.Cancer science · 2010Article
- Long-lived Min mice develop advanced intestinal cancers through a genetically conservative pathway.Cancer research · 2009Article
- Segmental copy number variation shapes tissue transcriptomes.Nature genetics · 2009Article
- The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells.Nature genetics · 2009Article
- A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior.PloS one · 2009Article
- Assessing metabolic stress and autophagy status in epithelial tumors.Methods in enzymology · 2009Article
- Extensive genomic copy number variation in embryonic stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
Corrections and comments
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Authors and funding
15 authors.
Funding
Abstract
We used arrays of 2069 BACs (1303 nonredundant autosomal clones) to map sequence variation among Mus spretus (SPRET/Ei and SPRET/Glasgow) and Mus musculus (C3H/HeJ, BALB/cJ, 129/J, DBA/2J, NIH, FVB/N, and C57BL/6) strains. We identified 80 clones representing 74 autosomal loci of copy number variation (|log(2)ratio| >/= 0.4). These variant loci distinguish laboratory strains. By FISH mapping, we determined that 63 BACs mapped to a single site on C57BL/6J chromosomes, while 17 clones mapped to multiple chromosomes (n = 16) or multiple sites on one chromosome (n = 1). We also show that small ratio changes (Delta log(2)ratio approximately 0.1) distinguish homozygous and heterozygous regions of the genome in interspecific backcross mice, providing an efficient method for genotyping progeny of backcrosses.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.