Evidence map›Paper›PMID 15686447›Full record

ArticleThe Biochemical journal2005

Nop53p is a novel nucleolar 60S ribosomal subunit biogenesis protein.

Yaroslav Sydorskyy, David J Dilworth, Brendan Halloran, Eugene C Yi, Taras Makhnevych, Richard W Wozniak, John D Aitchison

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

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  16. Yeast nuclear RNA processing.World journal of biological chemistry · 2012
    Article
  17. Article
  18. Article
  19. Powering through ribosome assembly.RNA (New York, N.Y.) · 2009
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yaroslav SydorskyyInstitute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA.
David J Dilworth
Brendan Halloran
Eugene C Yi
Taras Makhnevych
Richard W Wozniak
John D Aitchison
University of Alberta · CAInstitute for Systems Biology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome biogenesis in Saccharomyces cerevisiae occurs primarily in a specialized nuclear compartment termed the nucleolus within which the rRNA genes are transcribed by RNA polymerase I into a large 35 S rRNA precursor. The ensuing association/dissociation and catalytic activity of numerous trans-acting protein factors, RNAs and ribosomal proteins ultimately leads to the maturation of the precursor rRNAs into 25, 5.8 and 18 S rRNAs and the formation of mature cytoplasmic 40 and 60 S ribosomal subunits. Although many components involved in ribosome biogenesis have been identified, our understanding of this essential cellular process remains limited. In the present study we demonstrate a crucial role for the previously uncharacterized nucleolar protein Nop53p (Ypl146p) in ribosome biogenesis. Specifically, Nop53p appears to be most important for biogenesis of the 60 S subunit. It physically interacts with rRNA processing factors, notably Cbf5p and Nop2p, and co-fractionates specifically with pre-60 S particles on sucrose gradients. Deletion or mutations within NOP53 cause significant growth defects and display significant 60 S subunit deficiencies, an imbalance in the 40 S:60 S ratio, as revealed by polysome profiling, and defects in progression beyond the 27 S stage of 25 S rRNA maturation during 60 S biogenesis.

Indexed as

Cell NucleolusGene Expression Regulation, FungalNuclear ProteinsPolyribosomesProtein SubunitsRibosomesRNA, FungalRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNop53 protein, S cerevisiaeNuclear ProteinsProtein SubunitsRNA, FungalRNA, RibosomalSaccharomyces cerevisiae Proteins

Identifiers

PMID15686447
PMCPMC1183461
OpenAlexW2085640997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.