ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005
Identification of candidate markers associated with agronomic traits in rice using discriminant analysis.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed, 57 citations in OpenAlex.
- Identification of quantitative trait loci for tillering, root, and shoot biomass at the maximum tillering stage in rice.Scientific reports · 2022Article
- Identification of QTLs for high grain yield and component traits in new plant types of rice.PloS one · 2020Article
- Identification and validation of FaP1D7, a putative marker associated with the biosynthesis of methyl butanoate in cultivated strawberry (Fragaria x ananassa).Scientific reports · 2017Article
- Dissecting Genetic Network of Fruit Branch Traits in Upland Cotton by Association Mapping Using SSR Markers.PloS one · 2017Article
- Application of subtracted gDNA microarray-assisted Bulked Segregant Analysis for rapid discovery of molecular markers associated with day-neutrality in strawberry (Fragaria x ananassa).Scientific reports · 2016Article
- Association Analysis in Rice: From Application to Utilization.Frontiers in plant science · 2016Review
- Article
- Association mapping for important agronomic traits in core collection of rice (Oryza sativa L.) with SSR markers.PloS one · 2014Article
- Association of molecular markers with cold tolerance and green period in zoysiagrass (Zoysia Willd.).Breeding science · 2012Article
- Identifying loci influencing grain number by microsatellite screening in bread wheat (Triticum aestivum L.).Planta · 2012Article
- Population structure and association mapping on chromosome 7 using a diverse panel of Chinese germplasm of rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Genetic diversity, structure and marker-trait associations in a collection of Italian tomato (Solanum lycopersicum L.) landraces.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Application of association mapping to understanding the genetic diversity of plant germplasm resources.International journal of plant genomics · 2008Article
- Rice molecular breeding laboratories in the genomics era: Current status and future considerations.International journal of plant genomics · 2008Article
- Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
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5 authors at 4 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Plant genetic mapping strategies routinely utilize marker genotype frequencies obtained from progeny of controlled crosses to declare presence of a quantitative trait locus (QTL) on previously constructed linkage maps. We have evaluated the potential of discriminant analysis (DA), a multivariate statistical procedure, to detect candidate markers associated with agronomic traits among inbred lines of rice (Oryza sativa L.). A total of 218 lines originating from the US and Asia were planted in field plots near Alvin, Texas, in 1996 and 1997. Agronomic data were collected for 12 economically important traits, and DNA profiles of each inbred line were produced using 60 SSR and 114 RFLP markers. Model-based methods revealed population structure among the lines. Marker alleles associated with all traits were identified by DA at high levels of correct percent classification within subpopulations and across all lines. Associated marker alleles pointed to the same and different regions on the rice genetic map when compared to previous QTL mapping experiments. Results from this study suggest that candidate markers associated with agronomic traits can be readily detected among inbred lines of rice using DA combined with other methods described in this report.
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